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AT1G54020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G54010.1); Has 2776 Blast hits to 2750 proteins in 64 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 0; Plants - 2758; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT1G54020EnsemblPlants:AT1G54020.1entrez:841840hmmpanther:PTHR22835
hmmpanther:PTHR22835:SF266Pfam:PF00657
Coordinates (TAIR10) chr1:-:20161805..20162923
Molecular Weight (calculated) 32457.80 Da
IEP (calculated) 7.84
GRAVY (calculated) -0.31
Length 286 amino acids
Sequence (TAIR10)
(BLAST)
001: MGIPHDLPPA LKPGTDVSRG ASFAVGSASI LGSPKDSLAL NQQVRKFNQM ISNWKVDYIQ KSVFMISIGM EDYYNFTKNN PNAEVSAQQA FVTSVTNRFK
101: SDINLLYSSG ASKFVVHLLA PLGCLPIARQ EFKTGNNCYE KLNDLAKQHN AKIGPILNEM AETKPDFQFT VFDFYNVILR RTQRNMNYRF SVTNISCCGV
201: GTHYAYGCGL PNVHSKLCEY QRSYLYFDAR HNTEKAQEAF AHLIFGADPN VIQPMNVREL MVYPVNEPMR EFWEDPMDEK LSLVQY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)