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AT1G52000.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27122571 (2016): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Mannose-binding lectin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mannose-binding lectin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: myrosinase-binding protein 1 (TAIR:AT1G52040.1); Has 167771 Blast hits to 59831 proteins in 3132 species: Archae - 576; Bacteria - 64709; Metazoa - 36025; Fungi - 10183; Plants - 11804; Viruses - 2110; Other Eukaryotes - 42364 (source: NCBI BLink).
Protein Annotations
BioGrid:26854EMBL:AC006216EMBL:AK226551EMBL:CP002684
EnsemblPlants:AT1G52000EnsemblPlants:AT1G52000.1entrez:841629Gene3D:2.100.10.30
GeneID:841629Genevisible:Q9ZU23GO:GO:0030246Gramene:AT1G52000.1
hmmpanther:PTHR23244hmmpanther:PTHR23244:SF208InParanoid:Q9ZU23InterPro:IPR001229
iPTMnet:Q9ZU23KEGG:ath:AT1G52000OMA:DEYITEVPaxDb:Q9ZU23
Pfam:PF01419Pfam:Q9ZU23Pfscan:PS51752PIR:F96559
PRIDE:Q9ZU23PRO:PR:Q9ZU23PROSITE:PS51752ProteinModelPortal:Q9ZU23
Proteomes:UP000006548RefSeq:NP_175612.1SMART:SM00915SMR:Q9ZU23
STRING:3702.AT1G52000.1SUPFAM:SSF51101TAIR:AT1G52000UniGene:At.37684
UniGene:At.67811UniProt:Q9ZU23
Coordinates (TAIR10) chr1:-:19333352..19335700
Molecular Weight (calculated) 73943.00 Da
IEP (calculated) 4.79
GRAVY (calculated) -0.74
Length 730 amino acids
Sequence (TAIR10)
(BLAST)
001: MSWDDGKHTK VKRVQLTFDD VIRSIEVEYD GTSLKSQPRG TAGTKIDGFT LSSDEYITEV NGYYKTTFSG EVITSLTFKT NKRTYGTYGN KTSSYFSVAA
101: PKDNQIVGFL GSSSHALNSI DAHFAPAPPP GSTGAKPGAS GIGSDSGSIG SAGTNPGADG TRETEKNAGG SKPSSGSAGT NPGASAVGNG ETEKNAGGSK
201: PSSGSAGTNP GASAGGNGET EKNVGGSKPS SGKAGTNPGA NAGGNGGTEK NAGGSKSSSG SARTNPGASA GGNGETVSNI GDTESNAGGS KSNDGANNGA
301: SGIESNAGST GTNFGAGGTG GIGDTESDAG GSKTNSGNGG TNDGASGIGS NDGSTGTNPG AGGGTDSNIE GTENNVGGKE TNPGASGIGN SDGSTGTSPE
401: GTESNADGTK TNTGGKESNT GSESNTNSSP QKLEAQGGNG GNQWDDGTDH DGVMKIHVAV GGLGIEQIRF DYVKNGQLKE GPFHGVKGRG GTSTIEISHP
501: DEYLVSVEGL YDSSNIIQGI QFQSNKHTSQ YFGYEYYGDG TQFSLQVNEK KIIGFHGFAD SHLNSLGAYF VPISSSSSSL TPPPNKVKAQ GGSYGETFDD
601: GAFDHVRKVY VGQGDSGVAY VKFDYEKDGK KETQEHGKMT LSGTEEFEVD SDDYITSMEV YVDKVYGYKS EIVIALTFKT FKGETSPRFG IETENKYEVK
701: DGKGGKLAGF HGKASDVLYA IGAYFIPAAN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)