AT2G25270.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:10759779..10762358 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59915.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.63 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.37 | ||||||||||||||||||||||||||||
| Length | 545 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLLLLFCCF FTSLSISHSH GASTIHISPT QPPAASSEKT GSVMKFIVAE APLLGPAGFN NPQVIEVASV ALAAQRTYRK DPLNGFEKYT GGWNISNQHY 101: WASVSYTAVP LFVLAAVWFL GFGICLLVIC MCHICHRTNS VGYSKVAYVV SLIFLLIFTV IAIIGCVLLY SGQIRYNKST TETLEYVMSQ ADSTISQLRA 201: ISDYLASAKQ AAVLQVLLPA NVQTEIDQIG VKLDSSVATI TEKSTNSSNH IRHFLDSVRV ALIVVSIVML VVTFLGLVSS IFGMQVIVYT LVILGWILVT 301: GTFILSGTFL VLHNATADTC VAMSEWVERP SSNTALDEIL PCTDNATAQE TLMRSREVTG QLVELINTVI TNVSNINFSP VFVPMYYNQS GPLLPLLCNP 401: FNHDLTDRSC SPGDLDLNNA TEAWTSFVCQ VSQNGTCTTT GRLTPALYSQ MASGVNISTG LIRDAPFLVQ LQDCSYAKQT FRDITNDHCP GLQRYGYWVY 501: VGLAILATAV MLSLMFWIIY SRERRHRKEA LPEFSESKEI VRVNF |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)