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AT5G46700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:17317660 (2007): plasma membrane
  • PMID:14517339 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetraspanin family protein
Curator
Summary (TAIR10)
Encodes a transmembrane protein of the tetraspanin (TET) family, one of 17 members found in Arabidopsis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway. Required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis.
Computational
Description (TAIR10)
TORNADO 2 (TRN2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: radial pattern formation, meristem structural organization, aging, leaf vascular tissue pattern formation, root morphogenesis; LOCATED IN: plasma membrane; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: tetraspanin2 (TAIR:AT2G19580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVFPeggNOG:ENOG410YAS0EMBL:AB016882EMBL:AK226278
EMBL:AY070423EMBL:BT020321EMBL:CP002688EnsemblPlants:AT5G46700
EnsemblPlants:AT5G46700.1entrez:834713GeneID:834713Genevisible:Q9FIQ5
GO:GO:0005886GO:GO:0009506GO:GO:0009554GO:GO:0009734
GO:GO:0009933GO:GO:0009934GO:GO:0009956GO:GO:0010015
GO:GO:0010305GO:GO:0016021Gramene:AT5G46700.1hmmpanther:PTHR32191
hmmpanther:PTHR32191:SF14HOGENOM:HOG000238911InParanoid:Q9FIQ5InterPro:IPR018499
KEGG:ath:AT5G46700OMA:FIGGFWRPaxDb:Q9FIQ5Pfam:PF00335
Pfam:Q9FIQ5PRIDE:Q9FIQ5PRO:PR:Q9FIQ5Proteomes:UP000006548
RefSeq:NP_199482.1STRING:3702.AT5G46700.1TAIR:AT5G46700tair10-symbols:TET1
tair10-symbols:TRN2TMHMM:TMhelixUniGene:At.29934UniGene:At.49135
UniProt:Q9FIQ5
Coordinates (TAIR10) chr5:+:18951035..18952439
Molecular Weight (calculated) 30288.60 Da
IEP (calculated) 8.06
GRAVY (calculated) 0.56
Length 269 amino acids
Sequence (TAIR10)
(BLAST)
001: MPLSNNVIGC INFITVLLSI PVIGAGIWLA IGTVNSCVKL LQWPVIILGV LILLVGLAGF IGGFWRITWL LVVYLIAMLI LIVLLGCLVG FIYMVTIRGS
101: GHPEPSRAYL EYSLQDFSGW LRRRVQRSYK WERIRTCLST TTICPELNQR YTLAQDFFNA HLDPIQSGCC KPPTKCGFTF VNPTYWISPI DMSADMDCLN
201: WSNDQNTLCY TCDSCKAGLL ANIKVDWLKA DIFLLLALIG LIIVYIIGCC AFRNAETEDI FRKYKQGYT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)