AT1G53070.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Legume lectin family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Legume lectin family protein; FUNCTIONS IN: carbohydrate binding, binding; INVOLVED IN: response to karrikin; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Lectin (InterPro:IPR016363); BEST Arabidopsis thaliana protein match is: Legume lectin family protein (TAIR:AT1G53080.1); Has 1891 Blast hits to 1870 proteins in 117 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 0; Plants - 1861; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:19778371..19779189 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 30379.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.84 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 272 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKIQILCFTT LFLAIFTSQV TTAYKFKFDY FGNGTDPISF HGDAEYGPDT DGKSRSGAIA LTRDNIPFSH GRAIFTTPIT FKPNASALYP FKTSFTFSIT 101: PKTNPNQGHG LAFIVVPSNQ NDAGSGLGYL SLLNRTNNGN PNNHLFAVEF DVFQDKSLGD MNDNHVGIDI NSVDSVVSVK SGYWVMTRSG WLFKDLKLSS 201: GDRYKAWIEY NNNYKVVSVT IGLAHLKKPN RPLIEAKFDL SKVIHEVMYT GFAGSMGRGV ERHEIWDWTF QN |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)