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AT1G53070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:27936405 (2017): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
  • PMID:21109274 (2011): extracellular region
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Legume lectin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Legume lectin family protein; FUNCTIONS IN: carbohydrate binding, binding; INVOLVED IN: response to karrikin; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Lectin (InterPro:IPR016363); BEST Arabidopsis thaliana protein match is: Legume lectin family protein (TAIR:AT1G53080.1); Has 1891 Blast hits to 1870 proteins in 117 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 0; Plants - 1861; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-678-MONOMEReggNOG:ENOG410JU3UeggNOG:ENOG411078GEMBL:AC022520
EMBL:AK229567EMBL:CP002684EnsemblPlants:AT1G53070EnsemblPlants:AT1G53070.1
entrez:841741Gene3D:2.60.120.200GeneID:841741Genevisible:Q9LNN2
GO:GO:0005618GO:GO:0005829GO:GO:0009505GO:GO:0030246
GO:GO:0048046GO:GO:0080167Gramene:AT1G53070.1hmmpanther:PTHR32401
hmmpanther:PTHR32401:SF2HOGENOM:HOG000153030InParanoid:Q9LNN2InterPro:IPR001220
InterPro:IPR013320InterPro:IPR016363iPTMnet:Q9LNN2KEGG:ath:AT1G53070
OMA:LIEAKFDPaxDb:Q9LNN2Pfam:PF00139Pfam:Q9LNN2
PhylomeDB:Q9LNN2PIR:C96571PIRSF:PIRSF002690PRIDE:Q9LNN2
PRO:PR:Q9LNN2ProteinModelPortal:Q9LNN2Proteomes:UP000006548RefSeq:NP_175715.1
SMR:Q9LNN2STRING:3702.AT1G53070.1SUPFAM:SSF49899TAIR:AT1G53070
TMHMM:TMhelixUniGene:At.16233UniProt:Q9LNN2
Coordinates (TAIR10) chr1:+:19778371..19779189
Molecular Weight (calculated) 30379.90 Da
IEP (calculated) 8.84
GRAVY (calculated) -0.26
Length 272 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIQILCFTT LFLAIFTSQV TTAYKFKFDY FGNGTDPISF HGDAEYGPDT DGKSRSGAIA LTRDNIPFSH GRAIFTTPIT FKPNASALYP FKTSFTFSIT
101: PKTNPNQGHG LAFIVVPSNQ NDAGSGLGYL SLLNRTNNGN PNNHLFAVEF DVFQDKSLGD MNDNHVGIDI NSVDSVVSVK SGYWVMTRSG WLFKDLKLSS
201: GDRYKAWIEY NNNYKVVSVT IGLAHLKKPN RPLIEAKFDL SKVIHEVMYT GFAGSMGRGV ERHEIWDWTF QN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)