AT1G11130.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Leucine-rich repeat protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a receptor-like kinase protein with a predicted extracellular domain of six leucine-rich repeats and an intracellular serine-threonine kinase domain expressed throughout the developing root. Regulates expression of GLABRA2, CAPRICE, WEREWOLF, and ENHANCER OF GLABRA3. Required for floral organ shape, the development of the outer integument of ovules, and stem development. Regulates cell shape and cell division planes in the L2 layer of floral meristems and the L1-derived outer integument of ovules. Controls specification of epidermal root hairs. Participates in the coordination of cell morphogenesis between cell layers during floral development. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
STRUBBELIG (SUB); FUNCTIONS IN: receptor signaling protein serine/threonine kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 3 (TAIR:AT4G03390.1); Has 153928 Blast hits to 101875 proteins in 2737 species: Archae - 122; Bacteria - 10876; Metazoa - 38100; Fungi - 7570; Plants - 81122; Viruses - 718; Other Eukaryotes - 15420 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:3723135..3727178 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 84464.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.15 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 768 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSFTRWEVFF GLSVLALTMP FSAGVTNLRD VSAINNLYIT LGAPSLHHWL AFGGDPCGEK WQGVVCDSSN ITEIRIPGMK VGGGLSDTLA DFSSIQVMDF 101: SSNHISGTIP QALPSSIRNL SLSSNRFTGN IPFTLSFLSD LSELSLGSNL LSGEIPDYFQ QLSKLTKLDL SSNILEGHLP SSMGDLASLK ILYLQDNKLT 201: GTLDVIEDLF LTDLNVENNL FSGPIPPNLL KIPNFKKDGT PFNTSIITPP PPPVVDPPPA THRAPPVPRI PPVSGVPPAP FAPFAPLQPQ QHPPPSPPLV 301: WSPPSSDNGG GDPWNSVSGQ PTLQISPPSG SGSGKFWSTQ RIILVVSSVA IIVLVSGLCV TLWRCCRSKI YNRYYSGARK DLQRPYFNKP PSQPTPTMGK 401: VSREPMVKPF DGYGAGDRKY GYPMPQRAEE SRRAMPPTSY YNKDVNTPQK PLQQPPRQFQ SNDTASKRAA HFPPGLNSSS SATVFTIASL QQYTNNFSEE 501: NIIGEGSIGN VYRAELRHGK FLAVKKLSNT INRTQSDGEF LNLVSNVLKL KRGHILELLG YCNEFGQRLL VYEYCPNGSL QDALHLDRKL HKKLTWNVRI 601: NIALGASKAL QFLHEVCQPP VVHQNFKSSK VLLDGKLSVR VADSGLAYML PPRPTSQMAG YAAPEVEYGS YTCQSDVFSL GVVMLELLTG RRPFDRTRPR 701: GHQTLAQWAI PRLHDIDALT RMVDPSLHGA YPMKSLSRFA DIISRSLQME PGFRPPISEI VQDLQHMI |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)