AT1G78980.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : STRUBBELIG-receptor family 5 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
STRUBBELIG-receptor family 5 (SRF5); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 4 (TAIR:AT3G13065.1); Has 170876 Blast hits to 124647 proteins in 4182 species: Archae - 145; Bacteria - 15263; Metazoa - 50770; Fungi - 9097; Plants - 76380; Viruses - 385; Other Eukaryotes - 18836 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:29707923..29711266 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 76949.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.96 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 699 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MTQKLVRLVI VSLAITVTLL QAKTDNQEVS ALNVMFTSLN SPSKLKGWKA NGGDPCEDSW EGVKCKGSSV TELQLSGFEL GGSRGYLLSN LKSLTTFDLS 101: KNNLKGNIPY QLPPNIANLD FSENELDGNV PYSLSQMKNL QSINLGQNKL NGELPDMFQK LSKLETLDFS LNKLSGKLPQ SFANLTSLKK LHLQDNRFTG 201: DINVLRNLAI DDLNVEDNQF EGWIPNELKD IDSLLTGGND WSTETAPPPP PGVKYGRKSS GSKDGGGITA GTGMVIAGAC LGVLVLIIVL IALVSKKKSS 301: LSPHFIDEDN SHHTPKFKSL TSHGSAQELR VDFGNDYKDG KSGDSGDENI HRIGSKGLKH YVSSRVMSFT DTEFANKLNA KRTTSTRSAV EFELSDLQSA 401: TANFSPGNLL GEGSIGRVYR AKYSDGRTLA VKKIDSTLFD SGKSEGITPI VMSLSKIRHQ NIAELVGYCS EQGHNMLVYE YFRNGSLHEF LHLSDCFSKP 501: LTWNTRVRIA LGTARAVEYL HEACSPSVMH KNIKSSNILL DADLNPRLSD YGLSKFYLRT SQNLGEGYNA PEARDPSAYT PKSDVYSFGV VMLELLTGRV 601: PFDGEKPRPE RSLVRWATPQ LHDIDALSNI ADPALHGLYP PKSLSRFADI IALCVQVEPE FRPPMSEVVE ALVRMVQRSS MKLKDDLSSS YRAHDDYDY |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)