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AT1G78980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : STRUBBELIG-receptor family 5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
STRUBBELIG-receptor family 5 (SRF5); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 4 (TAIR:AT3G13065.1); Has 170876 Blast hits to 124647 proteins in 4182 species: Archae - 145; Bacteria - 15263; Metazoa - 50770; Fungi - 9097; Plants - 76380; Viruses - 385; Other Eukaryotes - 18836 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G78980-MONOMEReggNOG:ENOG410IVK9eggNOG:ENOG410YEQVEMBL:AC002986
EMBL:AY518290EMBL:CP002684EnsemblPlants:AT1G78980EnsemblPlants:AT1G78980.1
entrez:844238ExpressionAtlas:Q6R2K1Gene3D:3.80.10.10GeneID:844238
Genevisible:Q6R2K1GO:GO:0004672GO:GO:0005524GO:GO:0016021
Gramene:AT1G78980.1hmmpanther:PTHR27001hmmpanther:PTHR27001:SF233HOGENOM:HOG000239794
InParanoid:Q6R2K1InterPro:IPR000719InterPro:IPR001611InterPro:IPR003591
InterPro:IPR011009InterPro:IPR013210InterPro:IPR032675iPTMnet:Q6R2K1
KEGG:ath:AT1G78980OMA:SSKNTHAPaxDb:C0LGJ3PaxDb:Q6R2K1
Pfam:PF00069Pfam:PF08263Pfam:PF13855Pfam:Q6R2K1
Pfscan:PS50011PhylomeDB:Q6R2K1PIR:T01057PRIDE:Q6R2K1
PRO:PR:Q6R2K1PROSITE:PS50011ProteinModelPortal:Q6R2K1Proteomes:UP000006548
Reactome:R-ATH-450302Reactome:R-ATH-450321RefSeq:NP_178019.2SMART:SM00369
SMR:Q6R2K1STRING:3702.AT1G78980.1SUPFAM:SSF52058SUPFAM:SSF56112
TAIR:AT1G78980tair10-symbols:SRF5TMHMM:TMhelixUniGene:At.19007
UniGene:At.50047UniProt:C0LGJ3UniProt:Q6R2K1
Coordinates (TAIR10) chr1:-:29707923..29711266
Molecular Weight (calculated) 76949.40 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.36
Length 699 amino acids
Sequence (TAIR10)
(BLAST)
001: MTQKLVRLVI VSLAITVTLL QAKTDNQEVS ALNVMFTSLN SPSKLKGWKA NGGDPCEDSW EGVKCKGSSV TELQLSGFEL GGSRGYLLSN LKSLTTFDLS
101: KNNLKGNIPY QLPPNIANLD FSENELDGNV PYSLSQMKNL QSINLGQNKL NGELPDMFQK LSKLETLDFS LNKLSGKLPQ SFANLTSLKK LHLQDNRFTG
201: DINVLRNLAI DDLNVEDNQF EGWIPNELKD IDSLLTGGND WSTETAPPPP PGVKYGRKSS GSKDGGGITA GTGMVIAGAC LGVLVLIIVL IALVSKKKSS
301: LSPHFIDEDN SHHTPKFKSL TSHGSAQELR VDFGNDYKDG KSGDSGDENI HRIGSKGLKH YVSSRVMSFT DTEFANKLNA KRTTSTRSAV EFELSDLQSA
401: TANFSPGNLL GEGSIGRVYR AKYSDGRTLA VKKIDSTLFD SGKSEGITPI VMSLSKIRHQ NIAELVGYCS EQGHNMLVYE YFRNGSLHEF LHLSDCFSKP
501: LTWNTRVRIA LGTARAVEYL HEACSPSVMH KNIKSSNILL DADLNPRLSD YGLSKFYLRT SQNLGEGYNA PEARDPSAYT PKSDVYSFGV VMLELLTGRV
601: PFDGEKPRPE RSLVRWATPQ LHDIDALSNI ADPALHGLYP PKSLSRFADI IALCVQVEPE FRPPMSEVVE ALVRMVQRSS MKLKDDLSSS YRAHDDYDY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)