AT1G21880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : lysm domain GPI-anchored protein 1 precursor | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
lysm domain GPI-anchored protein 1 precursor (LYM1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); BEST Arabidopsis thaliana protein match is: Peptidoglycan-binding LysM domain-containing protein (TAIR:AT1G77630.1); Has 655 Blast hits to 634 proteins in 130 species: Archae - 0; Bacteria - 234; Metazoa - 0; Fungi - 1; Plants - 403; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:7680689..7682048 | ||||||||
| Molecular Weight (calculated) | 33403.10 Da | ||||||||
| IEP (calculated) | 4.58 | ||||||||
| GRAVY (calculated) | 0.33 | ||||||||
| Length | 316 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MKIPEKPIFL IFVSLILASS LTFTATAKST IEPCSSNDTC NALLGYTLYT DLKVSEVASL FQVDPISILL ANAIDISYPD VENHILPSKL FLKIPITCSC 101: VDGIRKSVST HYKTRPSDNL GSIADSVYGG LVSAEQIQEA NSVNDPSLLD VGTSLVIPLP CACFNGTDNS LPAVYLSYVV KEIDTLVGIA RRYSTTITDL 201: MNVNAMGAPD VSSGDILAVP LSACASKFPR YASDFGLIVP NGSYALAAGH CVQCSCALGS RNLYCEPASL AVSCSSMQCR NSNLMLGNIT VQQTSAGCNV 301: TTCDYNGIAN GTILTM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)