AT5G62710.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.999 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Leucine-rich repeat protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G31420.2); Has 175257 Blast hits to 128076 proteins in 4599 species: Archae - 150; Bacteria - 15408; Metazoa - 46877; Fungi - 10024; Plants - 81619; Viruses - 466; Other Eukaryotes - 20713 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:25187438..25190325 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67306.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.01 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 604 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGISNWVFSV ISVATLFVSC SFALTLDGFA LLELKSGFND TRNSLENWKD SDESPCSWTG VSCNPQDQRV VSINLPYMQL GGIISPSIGK LSRLQRLALH 101: QNSLHGNIPN EITNCTELRA MYLRANFLQG GIPPDLGNLT FLTILDLSSN TLKGAIPSSI SRLTRLRSLN LSTNFFSGEI PDIGVLSRFG VETFTGNLDL 201: CGRQIRKPCR SSMGFPVVLP HAESADESDS PKRSSRLIKG ILIGAMSTMA LAFIVIFVFL WIWMLSKKER KVKKYTEVKK QKDPSETSKK LITFHGDLPY 301: SSTELIEKLE SLDEEDIVGS GGFGTVYRMV MNDLGTFAVK KIDRSRQGSD RVFEREVEIL GSVKHINLVN LRGYCRLPSS RLLIYDYLTL GSLDDLLHER 401: AQEDGLLNWN ARLKIALGSA RGLAYLHHDC SPKIVHRDIK SSNILLNDKL EPRVSDFGLA KLLVDEDAHV TTVVAGTFGY LAPEYLQNGR ATEKSDVYSF 501: GVLLLELVTG KRPTDPIFVK RGLNVVGWMN TVLKENRLED VIDKRCTDVD EESVEALLEI AERCTDANPE NRPAMNQVAQ LLEQEVMSPS SGIDYYDDSH 601: SDYC |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)