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AT3G50230.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Leucine-rich repeat protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, embryo, flower, cultured cell, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G67200.1); Has 114411 Blast hits to 77012 proteins in 2677 species: Archae - 82; Bacteria - 10430; Metazoa - 23497; Fungi - 4473; Plants - 64970; Viruses - 181; Other Eukaryotes - 10778 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G50230-MONOMEReggNOG:COG0515eggNOG:ENOG410IIG0EMBL:AL132976
EMBL:CP002686EMBL:FJ708738EnsemblPlants:AT3G50230EnsemblPlants:AT3G50230.1
entrez:824185Gene3D:3.80.10.10GeneID:824185GO:GO:0004672
GO:GO:0005524GO:GO:0016021Gramene:AT3G50230.1hmmpanther:PTHR27008
hmmpanther:PTHR27008:SF1HOGENOM:HOG000116554InterPro:IPR000719InterPro:IPR001611
InterPro:IPR011009InterPro:IPR032675KEGG:ath:AT3G50230OMA:EIINRSC
Pfam:PF00069Pfscan:PS50011Pfscan:PS51450PhylomeDB:Q9SNE4
PIR:T45569PROSITE:PS50011PROSITE:PS51450Proteomes:UP000006548
RefSeq:NP_190592.1SMR:Q9SNE4STRING:3702.AT3G50230.1SUPFAM:SSF52058
SUPFAM:SSF56112TAIR:AT3G50230TMHMM:TMhelixUniGene:At.35515
UniProt:Q9SNE4
Coordinates (TAIR10) chr3:+:18620599..18623200
Molecular Weight (calculated) 72765.40 Da
IEP (calculated) 6.91
GRAVY (calculated) -0.11
Length 660 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLFFFYSLL FLLLLLRIST ASLPATNYFD SFLPSDAVAL LSFKSTADLD NKLLYSLTEP YDYCQWRGVD CSQDRVVRLI LDGVGLRGSF SPETLSRLDQ
101: LRVLSLENNS ISGSIPDLSP LVNLKTLTLS KNGFSGTLSS SILSLRRLTE LDLSFNNFSG EIPSGINALS RLSSLNLEFN RLNGTLPPLN LSSLISFNVS
201: SNNLTGLVPL TKTLLRFNAS SFSSNPGLCG EIINRSCGLH SSSPFFGSPK PNTTSSTSSA SSSEAPVIQS EQNGEAAMIV PPVVKKVKNG WLVLGFTIGL
301: ASLIVLGLCL VVFSLFIKNR REDYDDVIIT QPKREEENKE IKIQFQTTAP SSKKRIPRNG DLIFCGEGGG GGEAMYTVDQ LMRASAELLG RGSVGTTYKA
401: VMVNQMIVTV KRFAPSKTAI TSDLEFENQM EIVGGLKHPN LVPVKAYFQS NGERLVIYEY QPNGSLFNLI HGSRTSKAKP LHWTSCLKIA EDVAQALHYI
501: HQSSAKFHGN LKSTNILLGH DFEACVTDYC LSVLTDSSVP PNDPDISSYK APEIRKSTDS RPTSKCDVYS FGVFLLELLT GKTASRQPIM EPNDMLDWVR
601: AMRQEEERSK EENGLEMMTQ TACLCRVTSP EQRPTMKEVI KMIQEIKGSV VMTEENEKFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)