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AT1G29730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Leucine-rich repeat transmembrane protein kinase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat transmembrane protein kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Malectin/receptor-like protein kinase (InterPro:IPR021720), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G29740.1); Has 190606 Blast hits to 135535 proteins in 4784 species: Archae - 125; Bacteria - 16883; Metazoa - 53128; Fungi - 11226; Plants - 86237; Viruses - 443; Other Eukaryotes - 22564 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:ENOG410IFCUEMBL:CP002684EnsemblPlants:AT1G29730
EnsemblPlants:AT1G29730.1entrez:839851Gene3D:2.60.120.200Gene3D:3.80.10.10
GeneID:839851GO:GO:0004674GO:GO:0005524GO:GO:0016021
Gramene:AT1G29730.1hmmpanther:PTHR27006hmmpanther:PTHR27006:SF8InParanoid:F4I336
InterPro:IPR000719InterPro:IPR001245InterPro:IPR003591InterPro:IPR008271
InterPro:IPR011009InterPro:IPR013320InterPro:IPR017441InterPro:IPR021720
InterPro:IPR032675iPTMnet:F4I336KEGG:ath:AT1G29730OMA:CANKSST
PaxDb:F4I336Pfam:PF07714Pfam:PF11721Pfscan:PS50011
PRIDE:F4I336PROSITE:PS00107PROSITE:PS00108PROSITE:PS50011
ProteinModelPortal:F4I336Proteomes:UP000006548RefSeq:NP_174266.2scanprosite:PS00107
scanprosite:PS00108SMART:SM00220SMART:SM00369SMR:F4I336
STRING:3702.AT1G29730.1SUPFAM:SSF52058SUPFAM:SSF56112TAIR:AT1G29730
TMHMM:TMhelixUniGene:At.40676UniProt:F4I336
Coordinates (TAIR10) chr1:-:10400710..10405874
Molecular Weight (calculated) 107681.00 Da
IEP (calculated) 7.47
GRAVY (calculated) -0.15
Length 969 amino acids
Sequence (TAIR10)
(BLAST)
001: MSAAYNLMIK SKSCLFSSSI LFVVTLIYLL CTVSASPSLH PDEVEALKDI TETLGVKHLN LSEDPCLTKT LVISQGVLKE GQNSTIRCDC HFNNYSTCHI
101: KHFVLQKFNL PGRLPPMLYK FRHLESIDLY NNYLYGSIPM EWASLPYLKS ISVCANRLSG DIPKGLGKFI NLTLLVLEAN QFSGTIPKEL GNLVNLQGLG
201: LSSNQLVGGL PKTLAKLTKL TNLHLSDNRL NGSIPEFIGK LPKLQRLELY ASGLRGPIPD SIFHLENLID VRISDTVAGL GHVPQITSTS LKYLVLRNIN
301: LSGPIPTSIW DLPSLMTLDL SFNRLTGEIP AYATAPKYTY LAGNMLSGKV ETGAFLTAST NIDLSYNNFT WSPMCKERKN INTYESSHSK NRLTRLLPCS
401: AIKQCQNYSR SLHINCGGPD VTIENSRGRF LYEGDNYGLT GSATNYYRKN WGYSNTGDFM DDAITEDTYT VSSESAVSAK YPDLYQNARR SPLSLAYYAF
501: CFENGSYNVK LHFAEIQFSD VEPYTKLAKR VFNIYIQGKL IWEDFSIREE ANGTHKEVIR EVNTTVTDNT LEIRLYWAGK GTMIIPQRGY YGSLISAVSV
601: CPSSESECGG MKKKISKLKG PDLRTGSFSL RQLKVATNDF DPLNKIGEGG FGSVYKGRLP DGTLIAVKKL SSKSHQGNKE FVNEIGMIAC LQHPNLVKLY
701: GCCVEKNQLL LVYEYLENNC LSDALFAGRS CLKLEWGTRH KICLGIARGL AFLHEDSAVK IIHRDIKGTN VLLDKDLNSK ISDFGLARLH EDNQSHITTR
801: VAGTIGYMAP EYAMRGHLTE KADVYSFGVV AMEIVSGKSN AKYTPDDECC VGLLDWAFVL QKKGDIAEIL DPRLEGMFDV MEAERMIKVS LLCANKSSTL
901: RPNMSQVVKM LEGETEIEQI ISDPGVYSDN LHFKPSSLSS DYILSIPSSS ESAYDLYPLS PESIVFTIQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)