AT1G62130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AAA-type ATPase family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), SMAD/FHA domain (InterPro:IPR008984), ATPase, AAA-type, conserved site (InterPro:IPR003960), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G24860.1); Has 28359 Blast hits to 26057 proteins in 3006 species: Archae - 1474; Bacteria - 9731; Metazoa - 4550; Fungi - 3212; Plants - 2735; Viruses - 22; Other Eukaryotes - 6635 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:22962365..22968920 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 114917.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.09 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1043 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVSPGRSESI SGENNTTLPD GSSGKRIPPS SPSGDKSPSS KRSKLGDGSG ASTDSSEAPT SEDAKIAEGL TPTLPDSSFS GWTYRHCTFK TPWCKLLSQS 0101: AKQQNLCLYE SSCTFGSCLT SDFTLHDRNL GAFLCKITRI QRNGNVVAVL DITGTGGPLR INKAFVIKNV SHELHSGDEL VFGLNRSYAF IYQQMSKVTV 0201: ISGGEQVPAG KFLQLEREAR DPSRVSMLAS LEISRENPAT SGVQEGVEGY FPVNNQSNKA ADSGVVISHN QDSKMEILDE ENEVTRNRRA QQAAKFREYI 0301: RAGIVDGKRL EFSFENFPYY LSEHTKYVLL AVSDMHLNKM NIGYAPYASD LTILNPRILL SGPAGSEIYQ EILAKALANS FNAKLLIFDS NPILGVMTAK 0401: EFESLMNGPA LIDRGKSLDL SSGQGDSSIP SPATSPRSFG TPISGLLILH WGKTLAGDRV RFFGDELCPG LPTSRGPPYG FIGKVLLVFD ENPSAKVGVR 0501: FENPVPDGVD LGQLCEMGHG FFCSATDLQF ESSASDDLNE LLVTKLFEVA HDQSRTCPVI IFLKDAEKYF VGNSHFCSAF KSKLEVISDN LIVICSQTHS 0601: DNPKEKGIGR LTDLFVNKVT IYMPQGEELL KSWKYHLDRD AETLKMKANY NHLRMVLGRC GIECEGIETL CMKDLTLRRD SAEKIIGWAL SHHIKSNPGA 0701: DPDVRVILSL ESLKCGIELL EIESKKSLKD IVTENTFEIS DIIPPSEIGV TFDDIGALEN VKDTLKELVM LPFQWPELFC KGQLTKPCNG ILLFGPSGTG 0801: KTMLAKAVAT EAGANLINMS MSRWFSEGEK YVKAVFSLAS KISPSIIFLD EVESMLHRYR LKTKNEFIIN WDGLRTNEKE RVLVLAATNR PFDLDEAVIR 0901: RLPHRLMVGL PDARSRSKIL KVILSKEDLS PDFDIDEVAS MTNGYSGNDL KNLCVTAARR RIIEIVEKEK SERDAAVAEG RVPPAGSGGS DLRVLKMEDF 1001: RNALELVSMS ISSKSVNMTA LRQWNEDYGE GGSRRNESFS QYV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)