AT1G33400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: tetratricopetide-repeat thioredoxin-like 4 (TAIR:AT3G58620.1); Has 7233 Blast hits to 6122 proteins in 455 species: Archae - 134; Bacteria - 1092; Metazoa - 2972; Fungi - 793; Plants - 1224; Viruses - 0; Other Eukaryotes - 1018 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:12104891..12109488 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89138.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.65 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 798 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKLKSLIPE DLLQTVKSSS VDDLLSTSSS LLRLFLGLPQ FHQAVSELAN PELGCCGKNE ETSLDLKRRG NHCFRSRDFD EALRLYSKAL RVAPLDAIDG 101: DKSLLASLFL NRANVLHNLG LLKESLRDCH RALRIDPYYA KAWYRRGKLN TLLGNYKDAF RDITVSMSLE SSLVGKKQLQ NELKAIPDYQ NNQTLEHDEY 201: RPSNDAGVDH LPSVQMEVKL RCVSTKEKGR GMVSECDIEE ASVIHVEEPF SVVISKSCRE THCHFCLNEL PADTVPCPSC SIPVYCSESC QIQSGGMLST 301: NEMDKHHIFQ KLPDDIVEHI KGVTSADIYY FATDLIQEHQ HECRGANWPA VLPSDAVLAG RIIMKLINQG KAATDLSNLQ EILELSHTYS KMNPENKLEL 401: HLLSIVLIWC LSKSSCPNLS VCEASVTQTI ILLSQIKVNS IAVARMKSSG DSFKCLPSGN ISTKEPIQSL EQIRVGQALY KTGSLFNHSC KPNIHLYFLS 501: RGLIMQTTEF VPTGCPLELS YGPEVGKWDC KNRIRFLEEE YFFHCRCRGC AQINISDLVI NGYGCVNTNC TGVVLDSNVA TCESEKLNHF FTAPRNVDQQ 601: VQMREKVYAD VGEVASSLLS KPSGSLHIEP EICLKCGSRC DIENSHAEVN KAWNHMRRVE ELMNSGRANY SVLSDCSRSI AVLRTFLHMY NKDIADAEDK 701: VAQACYLAGE LVDARKHCEA SIKILKRLYE DEHVVIGNEM VKLASIQLAS GDSSGAWDTT KRSSQIFSKY YGSHAETLFS YLPCLKQETA KAVNLSTS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)