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AT1G80260.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Spc97 / Spc98 family of spindle pole body (SBP) component
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 1427 (emb1427); FUNCTIONS IN: tubulin binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: spindle pole, microtubule organizing center; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G20570.1); Has 1146 Blast hits to 1005 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 591; Fungi - 250; Plants - 182; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZYW9eggNOG:KOG4344EMBL:AK228920EMBL:CP002684
EnsemblPlants:AT1G80260EnsemblPlants:AT1G80260.1entrez:844366GeneID:844366
GO:GO:0000922GO:GO:0000923GO:GO:0005200GO:GO:0005874
GO:GO:0007126GO:GO:0008274GO:GO:0031122GO:GO:0043015
GO:GO:0051415GO:GO:0090063GO:GO:0090307Gramene:AT1G80260.1
hmmpanther:PTHR19302hmmpanther:PTHR19302:SF33HOGENOM:HOG000083310InterPro:IPR007259
KEGG:ath:AT1G80260KO:K16572OMA:FTIYIRRPANTHER:PTHR19302
Pfam:PF04130PhylomeDB:Q0WPZ0Proteomes:UP000006548RefSeq:NP_565235.3
SMR:Q0WPZ0STRING:3702.AT1G80260.1TAIR:AT1G80260tair10-symbols:emb1427
UniGene:At.33948UniProt:Q0WPZ0
Coordinates (TAIR10) chr1:+:30175924..30180511
Molecular Weight (calculated) 111446.00 Da
IEP (calculated) 6.08
GRAVY (calculated) -0.07
Length 995 amino acids
Sequence (TAIR10)
(BLAST)
001: MESLLRADQT LIPGAMCSRR VWTHSELALP SVSVTELDLV RGLLQALQGL SSPFLFWDQT GQTFRAKSHI RVSHLSHSSL HVLLAGFLYP ATCLKLVESI
101: VAAINTSLRS PPTLMAFSDS VSAWLERLRD IALKEEVMID NSDITVTPTL LGLTSSLSSL CSGAEYLLQV VHGAIPHTFF DSNSTISAAE IAVHVLDYLY
201: KKLDEVCLVQ GGEVEGFHML LQMFAGSLLP YIEGLDSWLF EGTLDDPCEE LFFTANQSVS VDDAEFWEKS YQLMKVPNSK SNVTSLNEKK VMSGHDANSS
301: LASDKDKEQN TRVLCPLFIK DICKSIVSAG KSLQLMQHIP STSSENSGKT QFHGRNGYGK SSVGSLLTKM SSCSSTADLS LSEVFCLTLA GLIGHGDHVS
401: RYLWKDEADE WEISPTLASY ISGELVNDMD NKDLPVLTCS ERMWYKLLVG AVQEKRAMEA KSELQSACYA TGVKDGNSGL TAQKALQGLF CNENLVVSVS
501: KMDLERNRNA WNVLNLSQNY CLPSLNDESL LSAVFEESGM ADAGLSGTNY KFGFQFGRSE YISSQDDTNL LETLFPFPTL LPSFQPKLHL SEFLPFQKNS
601: TLPSRVLSWL LKAEPMDTRL PVVIMQECFT IYIRRQVDYI GKVILSKLMN DWKLMHELAV LRAIYLLGSG DLLQHFLTVI FDRLGKGESS NDDFELNIIL
701: QESIRNSADA MLLSSPDSLV VSISREDRDK DDKGDIIPLS STRKSRVNSF GIDCLESLKF TYKVPWPLEL IANSEAIKKY NQVMGFLLKV KRAKYVLDKA
801: RRWMWKGKGS ATKIRKHHWL LEQKLLNFVD AFHQYVMDRV YHTAWRELCE AMVKAGSLDE VIYVHETYLL SIQRQCFVVQ EKLWAIIASR INMILGLALE
901: FYSIQQTLSS GGAVSAIKAR CEMEIDRIEK QFEDCIAFLL RVLSSKLNVG HFPHLADLVT RINYNYHYMS DTGSLMTTSG AETNSSRPWT AKSDV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)