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AT5G17410.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Spc97 / Spc98 family of spindle pole body (SBP) component
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Spc97 / Spc98 family of spindle pole body (SBP) component; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: spindle pole body component 98 (TAIR:AT5G06680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:16883eggNOG:ENOG410XNREeggNOG:KOG2001EMBL:AF360238
EMBL:AL391142EMBL:AY040037EMBL:CP002688EnsemblPlants:AT5G17410
EnsemblPlants:AT5G17410.1EnsemblPlants:AT5G17410.2entrez:831607ExpressionAtlas:Q9C5H9
GeneID:831607Genevisible:Q9C5H9GO:GO:0000226GO:GO:0000922
GO:GO:0000930GO:GO:0005635GO:GO:0005737GO:GO:0005938
GO:GO:0033566GO:GO:0048229GO:GO:0055028GO:GO:0090063
hmmpanther:PTHR19302hmmpanther:PTHR19302:SF13HOGENOM:HOG000030677IntAct:Q9C5H9
InterPro:IPR007259KEGG:ath:AT5G17410KO:K16569ncoils:Coil
OMA:AQWILGVPANTHER:PTHR19302PaxDb:Q9C5H9Pfam:PF04130
Pfam:Q9C5H9PhylomeDB:Q9C5H9PIR:T51578PRIDE:Q9C5H9
PRO:PR:Q9C5H9ProteinModelPortal:Q9C5H9Proteomes:UP000006548RefSeq:NP_568346.1
RefSeq:NP_850838.1SMR:Q9C5H9STRING:3702.AT5G17410.2TAIR:AT5G17410
UniGene:At.25558UniGene:At.71017UniProt:Q9C5H9
Coordinates (TAIR10) chr5:+:5730651..5736415
Molecular Weight (calculated) 76949.90 Da
IEP (calculated) 7.21
GRAVY (calculated) -0.12
Length 678 amino acids
Sequence (TAIR10)
(BLAST)
001: MESMTPISCP TTPRWNQDRP FLTGRFHQET RASSKFADSK RFTLDSSSSG VEQAIGCYDT PVQELIVIDD LLSALVGIEG RYISIKRFHG KEDSIAFQVD
101: PSMDLALQEL AKRIFPLCEY YLLIDQFVES SSQFKNGLVN HAFAAALRAL LLDYQAMVAQ LEHQFRLGRL SIQGLWFYCQ PMMGSMRALA AVIQQASTKQ
201: FVGSGVLNLL QSQAKAMAGD NSVRSLLEKM TECASNAYLS ILERWVYEGI IDDPYGEFFI AENRSLKKES LSQDSTAKYW SQRYSLKDTI PGFLANIAAT
301: ILTTGKYLNV MRECGHNVQV PISERSKLTI FGSNHHYLEC IKAAHEFASI ELVNLIKDKY DLVGRLRSIK HYLLLDQGDF LVHFMDIARE ELNKKVHEIS
401: VEKLQSLLDL ALRTTAAAAD PRHEDLTCCV DRASLLTTLG MHKDTDSNSI EDPMSITGLE TFSLSYKVQW PLSIVISKKA LSKYQLIFRF LFHCKHVERQ
501: LCGAWQIHQG IRSMNSKGTA ILRSSLLCRS MLKFISSLLH YLTFEVLEPN WHVMHDRLQS TRSVDEVIQH HDFFLDKCLR GCLLLLPDVL KKMEKLKSVC
601: LQYAAATQWL ISSSIDINSQ SHPQKTMIRD TTVTESIFNF EREFNSELQS LGPVLSKGSQ AEPYLTHLSQ WILGVSKE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)