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AT1G04950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TATA BOX ASSOCIATED FACTOR II 59
Curator
Summary (TAIR10)
Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant.
Computational
Description (TAIR10)
TATA BOX ASSOCIATED FACTOR II 59 (TAFII59); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, DNA binding; INVOLVED IN: pollen tube growth, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442), Histone-fold (InterPro:IPR009072), TATA box binding protein associated factor (TAF) (InterPro:IPR004823); BEST Arabidopsis thaliana protein match is: TBP-ASSOCIATED FACTOR 6B (TAIR:AT1G54360.1); Has 496 Blast hits to 490 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 209; Fungi - 144; Plants - 74; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
Protein Annotations
BioGrid:24605eggNOG:COG5095eggNOG:KOG2549EMBL:AC004809
EMBL:AK317247EMBL:AK317438EMBL:AY050962EMBL:AY091292
EMBL:AY463621EMBL:CP002684EnsemblPlants:AT1G04950EnsemblPlants:AT1G04950.1
EnsemblPlants:AT1G04950.2EnsemblPlants:AT1G04950.3entrez:839370Gene3D:1.10.20.10
Gene3D:1.25.10.10GeneID:839370Genevisible:Q9MAU3GO:GO:0005634
GO:GO:0006352GO:GO:0009860GO:GO:0051090Gramene:AT1G04950.1
Gramene:AT1G04950.2Gramene:AT1G04950.3hmmpanther:PTHR10221hmmpanther:PTHR10221:SF11
HOGENOM:HOG000159894InParanoid:Q9MAU3IntAct:Q9MAU3InterPro:IPR004823
InterPro:IPR009072InterPro:IPR011442InterPro:IPR011989InterPro:IPR016024
iPTMnet:Q9MAU3KEGG:ath:AT1G04950KO:K03131OMA:IVCHWLA
PaxDb:Q9MAU3Pfam:PF02969Pfam:PF07571Pfam:Q9MAU3
PhylomeDB:Q9MAU3PIR:A86183PRIDE:Q9MAU3PRO:PR:Q9MAU3
ProteinModelPortal:Q9MAU3Proteomes:UP000006548Reactome:R-ATH-674695Reactome:R-ATH-73776
Reactome:R-ATH-73779Reactome:R-ATH-75953Reactome:R-ATH-76042RefSeq:NP_001030969.1
RefSeq:NP_171987.1RefSeq:NP_849592.1SMART:SM00803SMR:Q9MAU3
STRING:3702.AT1G04950.1SUPFAM:SSF47113SUPFAM:SSF48371TAIR:AT1G04950
tair10-symbols:ATTAF6tair10-symbols:TAF6tair10-symbols:TAFII59UniGene:At.46000
UniGene:At.47479UniProt:Q9MAU3
Coordinates (TAIR10) chr1:-:1403606..1407184
Molecular Weight (calculated) 61368.20 Da
IEP (calculated) 7.52
GRAVY (calculated) -0.24
Length 549 amino acids
Sequence (TAIR10)
(BLAST)
001: MSIVPKETVE VIAQSIGITN LLPEAALMLA PDVEYRVREI MQEAIKCMRH SKRTTLTASD VDGALNLRNV EPIYGFASGG PFRFRKAIGH RDLFYTDDRE
101: VDFKDVIEAP LPKAPLDTEI VCHWLAIEGV QPAIPENAPL EVIRAPAETK IHEQKDGPLI DVRLPVKHVL SRELQLYFQK IAELAMSKSN PPLYKEALVS
201: LASDSGLHPL VPYFTNFIAD EVSNGLNDFR LLFNLMHIVR SLLQNPHIHI EPYLHQLMPS VVTCLVSRKL GNRFADNHWE LRDFAANLVS LICKRYGTVY
301: ITLQSRLTRT LVNALLDPKK ALTQHYGAIQ GLAALGHTVV RLLILSNLEP YLSLLEPELN AEKQKNQMKI YEAWRVYGAL LRAAGLCIHG RLKIFPPLPS
401: PSPSFLHKGK GKGKIISTDP HKRKLSVDSS ENQSPQKRLI TMDGPDGVHS QDQSGSAPMQ VDNPVENDNP PQNSVQPSSS EQASDANESE SRNGKVKESG
501: RSRAITMKAI LDQIWKDDLD SGRLLVKLHE LYGDRILPFI PSTEMSVFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)