AT3G13222.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GBF-interacting protein 1 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein that binds to G-box binding transcription factors and enhances their binding affinities to G-box in vitro. This protein localizes to the nucleus and is expressed predominantly in the root. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
GBF-interacting protein 1 (GIP1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1296 (InterPro:IPR009719); BEST Arabidopsis thaliana protein match is: Kinase-related protein of unknown function (DUF1296) (TAIR:AT1G55820.1); Has 232 Blast hits to 194 proteins in 50 species: Archae - 0; Bacteria - 13; Metazoa - 29; Fungi - 32; Plants - 145; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:4251287..4254206 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61815.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.12 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||
| Length | 567 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSRISGDGGS RVSIPADLLQ TIQNIREVTG KQHSDEDIFS VFKECFSDPH ETTQKLLYLD TFHEVRSKRE RKKENLVPNT QGRGRTGRKN FASSYTDASN 101: GRSAAFKKQS GANHIIGGSG TASSAPNNAR NDTKPSSIMA PNPISLPSGI SNQKIQDAII SPVDKVDTEE QPLSKATSSS KDVVEPDKSK ESSVSVAVSD 201: SVVENDTQYA VVETFQIPQQ SERVIKSEVA ASKCKNESLL KSDVGERPHV TFPVHIQVAK MLENGLTFGS FDSNFVREAS SDKFTIGCDD SNIESSHGTA 301: ASARKDISTF SQDKNHEISN SAAQNELTLQ PDQTVLPEEG SEGDKVKNEV LPITDTHQAA KCDAPPISYP DQYSLAAAQQ AMHLYRQQYS LNYFPYGPYF 401: PPYYMPQPYI HQYLSPNGFQ QQSYLPPGDD APAPPGAELP LTHIKPGSDI GNSPPTTIPF SYTSYAFNHI PSAATINATH KEEKKENMYT TGPLSLANLQ 501: ASPMYNLSLQ GQPIAFPTMQ AGIRGLYQQT QPILAPLSIS ARTEPIGPSH VTNQQPQAAR TNLGNNY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)