AT2G03640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.980 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT1G13730.1); Has 3027 Blast hits to 2983 proteins in 314 species: Archae - 0; Bacteria - 115; Metazoa - 1665; Fungi - 480; Plants - 492; Viruses - 0; Other Eukaryotes - 275 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:1104525..1106418 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46133.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.38 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.69 | ||||||||||||||||||||||||||||||||||||||||
| Length | 422 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTPESNAPSV DPQFVGNGFV QEYYNHLYDS TSEVHKFYLE DSMISRPGLD GEIVTIKSLK GINDQIMSID YKSSRIEILT ADSQSTLKNG VVTLVTGLVI 101: GNDGGRRKFS QSFFLVSRNG SYFVLNDTFR YVSDEFVEPE ATKEVEESQS TNAITEPANE SVEAVIVPTE AKTTVTKPAS AIPNGHAKVP EEKVVNENSS 201: LPKAAEAKLQ EEVPKKSFAL IVQSLAQSAG TLQVKASPVK RKPVEKPVAA PERKAPSPIR KQASAESIKP QAQGSSIFVA NLPMDATIEQ LYETFKSFGA 301: IRKDGIQVRS YPEKKNCIGF VAFENGEAVK NVFQAHRESP IRIGNRRASI EEKRGGNNQN GNRVSTRNNS GYKNEDGFRR DGYKPRGSGV NGGRGYGRRN 401: SESNGDGKAY QNNGHGNTEA KN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)