AT1G48950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : C3HC zinc finger-like | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
C3HC zinc finger-like ; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC-like (InterPro:IPR012935); BEST Arabidopsis thaliana protein match is: IAP-like protein 1 (TAIR:AT1G17210.1); Has 249 Blast hits to 238 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 75; Fungi - 80; Plants - 75; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:18107063..18110108 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65236.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.93 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||
| Length | 594 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAQDSEKRFH QIMDKLFTPS KSQLPSSSTS SSVEQQSRGK KRQNPSSALA LVEPKIVLAT IDRSSALKVP AGTSPSGLCR PWDRGDLMRR LATFKSMTWF 101: AKPQVISAVN CARRGWVNDD ADSIACESCG AHLYFSAPSS WSKQQVEKAA SVFSLKLESG HKLLCPWIEN SCEETLSEFP LMAPQDLVDR HEERSEALLQ 201: LLALPVISPS AIEYMRSSDL EEFLKRPIAP ACSDTAAESS QTESLTNHVG ASPAQLFYQA QKLISLCGWE PRALPYIVDC KDKLSETARG TETIDLLPET 301: ATRELLSISE STPIPNGISG NNENPTLPDT LNSDPSSVVL DCKLCGACVG LWVFSTVPRP LELCRVTGDT EINIEKHPKG GTLQHQPSSL KFTIAGGPPA 401: TKQNFKATIS LPIIGRNLRS RFASYSRDHD HGDVSSIQDQ QSRTAENNGD VTQNSNQVMN DIGEKADGGR NSTDVESDIA LQNKDKQMMV VRSNLPENNK 501: PRDSTAEKSA TSNKQMEFDP IKQHRHFCPW IWSTGRRGPG WRQTLSALQR HKGSCQTPPS SSSLFKVDDP LTSVRNLFKS PSPKKRKLNG GSSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)