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AT1G73720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : transducin family protein / WD-40 repeat family protein
Curator
Summary (TAIR10)
Encodes SMU1, a protein involved in RNA splicing.
Computational
Description (TAIR10)
SUPPRESSORS OF MEC-8 AND UNC-52 1 (SMU1); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 78641 Blast hits to 32338 proteins in 893 species: Archae - 70; Bacteria - 10419; Metazoa - 31204; Fungi - 16808; Plants - 9656; Viruses - 6; Other Eukaryotes - 10478 (source: NCBI BLink).
Protein Annotations
BioGrid:28926eggNOG:ENOG410XP39eggNOG:KOG0275EMBL:AC012679
EMBL:AF462796EMBL:AY102129EMBL:CP002684EnsemblPlants:AT1G73720
EnsemblPlants:AT1G73720.1entrez:843707Gene3D:2.130.10.10GeneID:843707
Genevisible:Q8W117GO:GO:0005634GO:GO:0008380GO:GO:0080008
Gramene:AT1G73720.1hmmpanther:PTHR22848HOGENOM:HOG000264846InParanoid:Q8W117
IntAct:Q8W117InterPro:IPR001680InterPro:IPR006594InterPro:IPR006595
InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775InterPro:IPR020472
KEGG:ath:AT1G73720KO:K13111ncoils:CoilOMA:CTMKLWK
PaxDb:Q8W117Pfam:PF00400Pfam:Q8W117Pfscan:PS50082
Pfscan:PS50294Pfscan:PS50896Pfscan:PS50897PhylomeDB:Q8W117
PIR:D96764PRIDE:Q8W117PRINTS:PR00320PRO:PR:Q8W117
PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294PROSITE:PS50896
PROSITE:PS50897ProteinModelPortal:Q8W117Proteomes:UP000006548RefSeq:NP_177513.2
scanprosite:PS00678SMART:SM00320SMART:SM00667SMART:SM00668
SMR:Q8W117STRING:3702.AT1G73720.1SUPFAM:SSF50978TAIR:AT1G73720
tair10-symbols:SMU1UniGene:At.27865UniProt:Q8W117
Coordinates (TAIR10) chr1:+:27725059..27729722
Molecular Weight (calculated) 57726.90 Da
IEP (calculated) 7.00
GRAVY (calculated) -0.35
Length 511 amino acids
Sequence (TAIR10)
(BLAST)
001: MALEIEARDV IKIMLQFCKE NSLNQTFQTL QSECQVSLNT VDSVETFISD INSGRWDSVL PQVSQLKLPR NKLEDLYEQI VLEMIELREL DTARAILRQT
101: QVMGVMKQEQ AERYLRMEHL LVRSYFDPHE AYGDSTKERK RAQIAQAVAA EVTVVPPSRL MALIGQALKW QQHQGLLPPG TQFDLFRGTA AMKQDVEDTH
201: PNVLTHTIKF GKKSHAECAR FSPDGQFLAS SSVDGFIEVW DYISGKLKKD LQYQADESFM MHDDPVLCID FSRDSEMLAS GSQDGKIKIW RIRTGVCIRR
301: FDAHSQGVTS LSFSRDGSQL LSTSFDQTAR IHGLKSGKLL KEFRGHTSYV NHAIFTSDGS RIITASSDCT VKVWDSKTTD CLQTFKPPPP LRGTDASVNS
401: IHLFPKNTEH IVVCNKTSSI YIMTLQGQVV KSFSSGNREG GDFVAACVST KGDWIYCIGE DKKLYCFNYQ SGGLEHFMMV HEKDVIGITH HPHRNLLATY
501: SEDCTMKLWK P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)