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AT5G53620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 28929 Blast hits to 19542 proteins in 1425 species: Archae - 211; Bacteria - 3079; Metazoa - 14558; Fungi - 2157; Plants - 966; Viruses - 80; Other Eukaryotes - 7878 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKGEeggNOG:ENOG410YFGREMBL:AY054602EMBL:BT008429
EMBL:CP002688EnsemblPlants:AT5G53620EnsemblPlants:AT5G53620.1EnsemblPlants:AT5G53620.2
EnsemblPlants:AT5G53620.3entrez:835444GeneID:835444GO:GO:0005829
Gramene:AT5G53620.1Gramene:AT5G53620.2Gramene:AT5G53620.3hmmpanther:PTHR35766
hmmpanther:PTHR35766:SF1KEGG:ath:AT5G53620ncoils:CoilOMA:NTRHGYG
PhylomeDB:Q93XY1Proteomes:UP000006548RefSeq:NP_001078752.1RefSeq:NP_568795.1
RefSeq:NP_851184.1STRING:3702.AT5G53620.1TAIR:AT5G53620UniGene:At.7697
UniProt:Q93XY1
Coordinates (TAIR10) chr5:+:21781217..21785061
Molecular Weight (calculated) 76321.20 Da
IEP (calculated) 5.67
GRAVY (calculated) -0.86
Length 682 amino acids
Sequence (TAIR10)
(BLAST)
001: METAASSVAT TRGGSLQNPS PTAPSRKEWR AVSDSQDTTD YVDLEQLKLN RTDERTIYEN GREQDGYSNS EMLQQQILNV SRKKGELQQL EIELRAQMIA
101: RHEIMEIQSN YESQFTEYAN AAARMQEQLH ENERSIREAE RKLEEKDREL HAIKLDNEAA WAKEGILREQ NKELATFRRE RDHSEAERSQ NIHKISELQE
201: HIQEKESQLS ELQEQNRIAQ ETILYKDEQL REAQGWIARA QEIDALQSST NHSLQAELRE RTEQYNQLWH GCQRQFAEME RLHVHTVQQL QQELANVREA
301: GGSKTNSGGA SQTIQNSGNQ FDAHGNSAES ANISVHSNGK SADNISSFTS TDDKATQNNR VDGISASNLA THGFLQAGQM TPLHSFVMHQ QEISQLVQPQ
401: VPSQHIEQSV LLQQKAQAVP DSSQMPMQNH VHPSQGVHGL VQSFGQGYGD IQTSQVAQYG TTTTPSSVNE QAVESGNGDY NGSNQSENNF QDISSQFRDA
501: LRLDSHSQNQ KPEELNGQVS PDEHSGAKSI VPETLVSSGK PERNSECALL DERSLLTCIL RTIPAGGRIR ISSTLPNRLG KMLAPLHWHD YRKKYGKLDD
601: FVASHLELFS IEDDYIQVRD GAQKMVAASA AAAKVAAAAA ASSSPNSIYV AMTPMAQSQG LKKNDNRVRQ SSDFMVKQQR KL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)