AT4G38890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FMN-linked oxidoreductases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity, zinc ion binding, nucleic acid binding; INVOLVED IN: oxidation reduction, tRNA processing, metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269), tRNA-dihydrouridine synthase, conserved site (InterPro:IPR018517); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT3G49640.1); Has 11364 Blast hits to 11268 proteins in 2588 species: Archae - 15; Bacteria - 7817; Metazoa - 496; Fungi - 531; Plants - 173; Viruses - 0; Other Eukaryotes - 2332 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:18135909..18139100 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77578.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.46 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 691 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSDVIAEHAV DTSVEGDAKA ALPVQSTKQF SVYEATSEEL IERSMAPIKK EFLCPPPPSR SVKQNDAADV RAPQSGLVQE KKSKRQLKRE RREQSTINLC 101: PQVARTEDVD SCQYKDKCRF NHDIEAFKAQ KADDIEGQCP FVASGMKCAY GLSCRFLGSH RDITGNSDDK EKSEMNFFNK ETQRLLWKNK MTFTNADAKL 201: KSLGLLGHAK KSNAAEEITA EKTQNGMNGT QATEVAVDSA VSSEHTSEMI QDVDIPGPLE TEEVRPMKKA KSEDQKNSKT GDVGGVYDGV KLEEETKKNG 301: YPTSKANVED EDSIKIVETD SSLKLHPREK KKLIDFRDKL YLAPLTTVGN LPFRRLCKVL GADVTCGEMA MCTNLLQGQA SEWALLRRHS SEDLFGVQIC 401: GSYPDTVSRV VELIDRECTV DFIDINMGCP IDMVVNKSAG SALLNKPLRM KNIVEVSSSI VETPITIKVR TAFFEGKNRI DSLIADIGNW GATAVTIHGR 501: SRQQRYSKSA DWDYIYQCTK NATTNLQVIG NGDVYSYLDW NKHKSDCPEL SSCMIARGAL IKPWIFTEIK EQRHWDITSG ERLNIMKDFV RFGLQHWGSD 601: TKGVETTRHF LLEWLSYTFR YIPVGLLDVI PQQINWRPPS YFGRDDLETL MMSESAGDWV RISEMLLGKV PEGFTFAPKH KSNAYDRAEN G |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)