suba logo
AT1G77550.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
peroxisome 0.545
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tubulin-tyrosine ligases;tubulin-tyrosine ligases
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
tubulin-tyrosine ligases;tubulin-tyrosine ligases; FUNCTIONS IN: tubulin-tyrosine ligase activity; INVOLVED IN: protein modification process; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Tubulin-tyrosine ligase (InterPro:IPR004344); Has 1977 Blast hits to 1869 proteins in 143 species: Archae - 0; Bacteria - 8; Metazoa - 1192; Fungi - 29; Plants - 92; Viruses - 0; Other Eukaryotes - 656 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ0AeggNOG:KOG2155EMBL:AK226662EMBL:BT014678
EMBL:CP002684EnsemblPlants:AT1G77550EnsemblPlants:AT1G77550.1entrez:844091
Gene3D:3.80.10.10GeneID:844091GO:GO:0006464GO:GO:0009507
GO:GO:0016874Gramene:AT1G77550.1hmmpanther:PTHR12241hmmpanther:PTHR12241:SF13
HOGENOM:HOG000029540IntAct:Q6IDC7InterPro:IPR004344InterPro:IPR027749
InterPro:IPR032675KEGG:ath:AT1G77550KO:K16609OMA:NEPKDAD
PANTHER:PTHR12241:SF13Pfam:PF03133Pfscan:PS51221PhylomeDB:Q6IDC7
PRO:PR:Q6IDC7PROSITE:PS51221Proteomes:UP000006548RefSeq:NP_177879.3
SMR:Q6IDC7STRING:3702.AT1G77550.1SUPFAM:SSF52047SUPFAM:SSF56059
TAIR:AT1G77550UniGene:At.17795UniProt:Q6IDC7
Coordinates (TAIR10) chr1:-:29138490..29142965
Molecular Weight (calculated) 97548.40 Da
IEP (calculated) 4.57
GRAVY (calculated) -0.26
Length 855 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKIESFDDF VKVHGILLAA SGLPPKLYPR LFEKLAYDTF DGGDYFQIES CEDDQRRKLL LTAESMPKDS DVFLVDHAWT FRLPDAYKQL KEIPGLAERM
101: ASLMSVDIDV DAGEEEVAEE LSVDQIIDNE IRYAADKGYD SLRWLELEGL GVDDSLLSLH LPSKFQDLVA LSLIGNKIES ADVVIQEIVK FKNLKALWLN
201: DNPVLQKSER QMADEILQGC PSLEIYNSCF TPNYGLWALG FCGDIFGKDN PGCVQQDQPL CNVTSLDLSN RSIHNLVNKA FSVHEMPLLS HLNIRGNSLD
301: QNSVGELLEV LKLFPSLSSL EVDIPGPLGI NALEILESLS NLSLLNGVDT AKILETGKHV VDSMLQPRIP ELNPDDTLVD RVLDAMWLYA LNYRLADDEK
401: LDETSLWYVM DELGSALRHS DEPNFKVAPF LFMPSGKLES AVSYSVMWPI KHSQKGDECT RDFLSGIGED KQRSARLTAW FQTPENYFIH EFEKYQQKLQ
501: AKAFESKPSN PSVSRSIQHS DGSPLLVYTD LPQVEEFLTR PEFVITNEPK DADILWTSVQ VDDELKKEVG ITDDQYINQF PFEACLVMKH HLAETIQMGY
601: GSPKWLQPTY NLETQLSQFI GDYCVRKRDQ LNNLWILKPW NMARTIDTSI TDNLSAIIRM METGPKICQK YIEHPALFKG NKFDLRYVVL VRSIDPLEIY
701: LIEIFWVRLS NNPYSLEKHS FFEYETHFTV MNYGRKLNHK PTAEFVREFE QEHNVKWMDI HEKVKQVIRA VFEAAALAHP EMQSPKSRAM YGVDVMLDSS
801: FEPKILEVTY CPDCMRACKY DMETIDGKGI VKGGDFFNNV FGCLFLDETA HVTPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)