AT4G13750.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes NO VEIN (NOV), a plant-specific nuclear factor required for leaf vascular development, cellular patterning and stem cell maintenance in the root meristem, as well as for cotyledon outgrowth and separation. nov mutations affect many aspects of auxin-dependent development without directly affecting auxin perception. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
NO VEIN (NOV); FUNCTIONS IN: ATP binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: no vein-like (TAIR:AT1G08300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:7975191..7987558 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 306365.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.34 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||
| Length | 2729 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MQGNHDGSWS LHPSTNNGSG RANGNININT VPGGGYLPQA NPVFPNFNQP IRYPIPQFPA NFYRPNFPDF SLGNPNFQPH QNLNFLHQQI PHQYGSAANH 0101: FLQNHNQNSF SFPPQSIPNN DISISQNHGA FENSSLKRRR QEEVVQVTDV VPKSNFASGE SANNSFSVSL PIPIATDDSG VSRVHGEKSS GKPKRKVDVL 0201: RIDKAVNKTR KLFVAAGESV SSTRVSRAVL EELQADSWRS LGVQMQDVPS LRQLMAIEGK INAFIHCFVG ARRIVTLHDL EVAICRNEFV DSFDDLELGP 0301: LLQHPLVLLY FPSISSSTGP VKITSEEIIS FLDSYLHTYM TEDVKLDEFL NFVASQKSVT SKEKLGVRIQ SLRMYVSFIL DAKRQEGETL KVLLTELHQK 0401: YHIPSSKKQQ RDKSLTVSER ADSFALHHKD YCGKHIRFDS SSSDENDNVY EVRNLNSSDH INSCPYPSVA EEMKRLGGSN KKRKGERRNH EKSDSSKLLR 0501: KSPSKLQGHA KQEIPKLADD SEAKKVFSVD EADFTLSEGD LRLFISTWKD TCKELSISTF VEKMLSFYNL GGSEGRAQIK RAKAMSSFPF VGLLNVAVTS 0601: LRRGMWDSIY DNFQMTSLSD TTNTGSGNQV GEINPIENSE LSKTQHVMPP THCNTVEEII RRLSLYFEHD LSGAKHIGIF RKLQTCENLL AEQFQVQDFE 0701: SLGWGGFFAF LEKHMLLLPT QLQRFLSREL QEEFPLEVHV NENLLTLLLS QASEFSSDKV LSRQTLARLV AEQFPSISFK VVGRDSEENF SEIIGKKKSS 0801: SKCVLFSATL LGAENSLTSK YLEESLTVGN DTEARSTTLN AVASKEVLDV LLRVPLLSDL NSWCHWDLRY APQFGPLMGC LNEINSTDLL CLVTRDGKII 0901: RADPSATADS FLEAALQGSA YRTAAQLLSL ISLNGRTHLP FSLLKCYAKR AFEVFFYNYS EEMELNDRNS LVQMHGPEKL STSFDKVIVV GEKAKVAKRD 1001: YAASKFLLDC LGYLPGEFRS LVVDILLPGL RSVVKDAPTR VLSACEQTEQ RIMLHDAGLL LGIVEWISDY HKFCSSCSPN SSIVENASSN LDSGAGFVQN 1101: ELEDPVQTKQ RCMIVSEKSC EYKEEPHESC HTFGGSGILC DSVGEAFTQT APEFYDNRAS VIDSIRRDEF GLDLTSSGSE MSMLQKQHAR LGRALQCLSQ 1201: ELYSQDSHFI LELVQNADDN KYPEHVEPTL TFILQKTGIV VLNNECGFMP ENIRALCDVG QSTKKGSGGY IGKKGIGFKS VFRVSDAPEI HSNGFHFKFD 1301: ISEGQIGYIL PTVVPPHDIE SLSSMLSGRA LHLKDAGWNT CITLPFRAID SERTTVNHIE PMFSDLHPSL LLFLHRLQCI VYRNVLDDSL LVMRKEVVSK 1401: NIVKVSCGEN SMTWFVASEK LKATNLRDDV QTTEISIGFT LDMLEDGTYR SCMIQEPVFA FLPLRTYGLK FIIQGDFILT SSREDVDEDS PWNQWLLSEF 1501: PGLFVDALRS FCSLPSFTQN LGKGVSSYMQ LVPLVGEVHG FFSSLPRSII SRLRTTNCLL LEGDGEEWVP PCKVLRNWNE KIRVLLKDGL LQEHLALGFL 1601: DKDIVLSDSL SRALGIEDYG PKTLVQILSS LSHKNGCLQS MGFTWLSSIL TELYLLFRSS GHGNVELGID KSLIDDLHKI PFIPLSNGKF TSLDEGAVWL 1701: HHDTTGLDLG DVFEAFPVLY GNLRTIDHSL LLASSVDEKS SVDDLVNMLC AIGVQKLSAH EIVKAHILPA FEARSTGAVD GLMVDYLCFV MTHLRSGCHI 1801: CLKERKYIIS ELRSKALVLS NYGLKQLGEG SIHFGEEYGN QVNMKKLTKN LDISWHVVDG TYLKHPASKF YACGLKEWRE FFQEIGIADF VQVVQVEKSI 1901: AEFYSVSHCE KYDINLLSPD LTVKDWESPE LVDLLSLLHK SNGRKGCKYL LEVLDRLWDD CYYDKTTVNY NSGTHGIIRS SESSFMRVIC DSLWIVSSMD 2001: SKLHLSKDLY HDCDDVQSIL GMNAPYAVPT VTSVKLLSDI GFKTKVSLDD ALEVLESWVH CGDSFKSSIS QITRFYKYLW NEMADSKQKI TEKLHTLPSV 2101: FVPHGIASRQ NDMISGIFLS LDDVYWNDSA GVLDEIKEIS SQISSVVEPL RRKTLGNIYP GLHDFFVNGC GVPETPSFQE YLKILGQFAH NVSPSSAAKA 2201: VFKIFLKWSD DLNSGKSSED VIHFKERLSE LEYTVLPTEN DKWVSLHSSF GLVCWCDNEK LKKRFKNKDK IEFISFGEND DEGQEVLQTK VSGLMHSLGI 2301: PSISEVVKRE AKYEGLQDNT VTVSLVNWAL PYAQRYIFTL HHEKYTQTKK TVHSQVKRLQ VFVVDKLSYR NVIPQYGISS KKEFKCSSLL QDKALYTTPS 2401: LDSHSLFMEL SRLFFNGVPD LHLANFLHLI KTMAESGLSE EQMESFILNS QKVHQVPDGE EIWSLKSAVK AKKKAGISLS WLPSSSKTRH GSSKTNTDDS 2501: KQELDTSSSK EDVTEALEEK IPIEMTNTNL VSGYDNCAGT SSRASEPNPL HSMHMISGST SGNQAAMHLN PNLPHEWNNS FTANFSDRDQ LHTGTPWAAQ 2601: AQQTGRKGEE IAYRYFVAKY GNEALVKWVN DQSETGLPYD LMIENRGGKK EYVEVKATVS TRKDYFNLTV REWQFANEKG ESYIIAHVLL GNSNAILTQH 2701: RNPVKLCQEG HLRLLVLMPN QRNEVNVTF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)