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AT2G17410.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ARID/BRIGHT DNA-binding domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARID/BRIGHT DNA-binding domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain-containing protein (TAIR:AT1G76510.2); Has 5354 Blast hits to 4027 proteins in 528 species: Archae - 33; Bacteria - 832; Metazoa - 1934; Fungi - 748; Plants - 402; Viruses - 44; Other Eukaryotes - 1361 (source: NCBI BLink).
Protein Annotations
BioGrid:1604eggNOG:ENOG410Y2APeggNOG:KOG2744EMBL:AK176382
EMBL:AK230281EMBL:AY052359EMBL:BT002633EMBL:CP002685
EnsemblPlants:AT2G17410EnsemblPlants:AT2G17410.1entrez:816247ExpressionAtlas:Q940Y3
Gene3D:1.10.150.60Gene3D:2.60.40.790GeneID:816247Genevisible:Q940Y3
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355hmmpanther:PTHR15348hmmpanther:PTHR15348:SF6HOGENOM:HOG000151156
InParanoid:Q940Y3InterPro:IPR001606InterPro:IPR002068InterPro:IPR008978
iPTMnet:Q940Y3OMA:EDQSAFMPaxDb:Q940Y3Pfam:PF00011
Pfam:PF01388Pfam:Q940Y3Pfscan:PS01031Pfscan:PS51011
PhylomeDB:Q940Y3PIR:G84551PRIDE:Q940Y3PRO:PR:Q940Y3
PROSITE:PS01031PROSITE:PS51011ProteinModelPortal:Q940Y3Proteomes:UP000006548
RefSeq:NP_179333.2SMART:SM00501SMR:Q940Y3STRING:3702.AT2G17410.1
SUPFAM:SSF46774SUPFAM:SSF49764TAIR:AT2G17410UniGene:At.12107
UniProt:Q940Y3
Coordinates (TAIR10) chr2:+:7559869..7563474
Molecular Weight (calculated) 86574.60 Da
IEP (calculated) 4.29
GRAVY (calculated) -0.78
Length 786 amino acids
Sequence (TAIR10)
(BLAST)
001: MENLTEIEST MESLTEMESE RVEQGTDKEI GSGEKRQDDV KETENENSGE RVGEEAPVRE HEDSPCLIVI EEGTSLASLE EVTNADDLPK IDDEKNSQFE
101: TSPHPSPSPS VALDTEEGLI NPTAEDTVEE NIVSSEVSSD ILKDDGDAVE VDRDTAEVQE ETANIPESKL SEDTGSPHHH ADILMVQEKA AEEHDMIASG
201: DHEEFPVNPD NKHSEENQSP HHHANNVMEQ DQAAEEREII SPGEHKEIPA NPDTKVVEEN NDRIDEGEAN NLNLAGDGSG AVDHDYLTKT ELDKVLEVPG
301: SETISKLEDR PSEHLSETSM NVEKELEMPA VEILPDNDKN SDVLAVGVSG DSDNVVSVLP ASQTSSDRDE GMITVDAEPT EDMKLDVPDS KLVTDTTVDS
401: TNNKDAHVEA NTERQDNSSA LVLNDANNES APVKRVPGPY VASSNIKSEA RGSGDLNNGV HKIVRTPPVF DGTMRAKRSF LLDDASDGNE SGTEEDQSAF
501: MKELDSFFRE RNMDFKPPKF YGEGLNCLKL WRAVTRLGGY DKVTGSKLWR QVGESFRPPK TCTTVSWTFR GFYEKALLEY ERHKVSEGEL QIPLPLELEP
601: MNIDNQASGS GRARRDAASR AMQGWHSQRL NGNGEVSDPA IKDKNLVLHQ KREKQIGTTP GLLKRKRAAE HGAKNAIHVS KSMLDVTVVD VGPPADWVKI
701: NVQRTQDCFE VYALVPGLVR EEVRVQSDPA GRLVISGEPE NPMNPWGATP FKKVVSLPTR IDPHHTSAVV TLNGQLFVRV PLEQLE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)