AT3G54350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Forkhead-associated (FHA) domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 1967 (emb1967); CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: Forkhead-associated (FHA) domain-containing protein (TAIR:AT1G75530.1); Has 387 Blast hits to 260 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 229; Fungi - 23; Plants - 94; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20122298..20126031 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77597.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.72 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||||||||||
| Length | 702 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGALAQVVPW IPEDDLLLKN AVEAGASLES LAKGAVQFSR RFSIRELQDR WHALLYDPVV SVEAAFRMAE LERTNPNFPT KFGRTGYSKE NKSSSRKRNA 101: ERLRSTYHSL RKKFRTEPFN SLDLGFLVPP NDSHFMDNGD ATHLGLEDSH MDIIHNAFPE ILAEGGCVTT HVLPEDNLQG DIPYVEGENL TFTEHAGLSV 201: CDVVHQDSEQ KLENTAHEAK NTMASTDFLA QLSTSLFEED MEPFMEVDGK EVDKSYYDGL SSLLVNSTND TNREAFPNPT EQEPSIAPTH PGEATLDDHV 301: MLELDGTIAL DPHPEIVGGV ICCLLNEEDP DIPCNDDIFL SNNSRPMSVS SLARRNFKDT NSPITTCVRD VSASKEKSEG YSLQAQKKKP GRLQGSTQGK 401: PEMGQPSKGS KFRASTSTEL KNTVAPGGSS SAQACSNTLL STGTGAKDGK KETATGTLFV GSDGHGNHPE KDSENCKEKN VVPPVNESPH AKDTDDGLIE 501: ITVPELEITR AEAEAEAEAH VCESDEDLPN YSDIEAMILD MDLEPDDQDN FDLEVSKYQS QDMKRTIIRL EQAAHSYMQR AIASRGAFAV LYGRYSKHYI 601: KKPEVLVGRS TEDLAVDIDL GREKRGSKIS RRQAIIRLGD DGSFHIKNLG KYSISVNEKE VDPGQSLILK SDCLVEIRGM PFIFETNQSC MQEYLKRRGK 701: VN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)