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AT1G71130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G22985.1); Has 5510 Blast hits to 5450 proteins in 244 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5499; Viruses - 2; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
BioGrid:28673eggNOG:ENOG410JU3BeggNOG:ENOG411078XEMBL:AC016972
EMBL:AK175578EMBL:AK175683EMBL:AK175740EMBL:AK175774
EMBL:AK175931EMBL:AK176043EMBL:AK176144EMBL:AK176280
EMBL:AY085910EMBL:BT025618EMBL:CP002684EnsemblPlants:AT1G71130
EnsemblPlants:AT1G71130.1entrez:843453Gene3D:3.30.730.10GeneID:843453
Genevisible:Q9C995GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009873GO:GO:0043565GO:GO:0044212GO:GO:0045893
Gramene:AT1G71130.1hmmpanther:PTHR31194hmmpanther:PTHR31194:SF0HOGENOM:HOG000112390
InParanoid:Q9C995IntAct:Q9C995InterPro:IPR001471InterPro:IPR016177
InterPro:IPR017392KEGG:ath:AT1G71130OMA:PAENQEDPANTHER:PTHR31194
PaxDb:Q9C995Pfam:PF00847Pfam:Q9C995Pfscan:PS51032
PhylomeDB:Q9C995PIR:H96735PIRSF:PIRSF038123PRINTS:PR00367
PRO:PR:Q9C995PROSITE:PS51032ProteinModelPortal:Q9C995Proteomes:UP000006548
RefSeq:NP_565012.1SMART:SM00380SMR:Q9C995STRING:3702.AT1G71130.1
SUPFAM:SSF54171TAIR:AT1G71130UniGene:At.35227UniGene:At.74176
UniProt:Q9C995
Coordinates (TAIR10) chr1:+:26822877..26823362
Molecular Weight (calculated) 17952.30 Da
IEP (calculated) 10.21
GRAVY (calculated) -0.73
Length 161 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRIIRISFT DAEATDSSSD EDTEERGGAS QTRRRGKRLV KEIVIDPSDS ADKLDVCKTR FKIRIPAEFL KTAKTEKKYR GVRQRPWGKW VAEIRCGRGA
101: CKGRRDRLWL GTFNTAEEAA LAYDNASIKL IGPHAPTNFG LPAENQEDKT VIGASEVARG A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)