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AT5G53290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cytokinin response factor 3
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.
Computational
Description (TAIR10)
cytokinin response factor 3 (CRF3); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 4 (TAIR:AT4G27950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20655eggNOG:ENOG410IVSNeggNOG:ENOG410YM3EEMBL:AB013388
EMBL:AY560878EMBL:BT020244EMBL:BT021136EMBL:CP002688
EnsemblPlants:AT5G53290EnsemblPlants:AT5G53290.1entrez:835410Gene3D:3.30.730.10
GeneID:835410Genevisible:Q9FK12GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0005737GO:GO:0006351GO:GO:0009736
GO:GO:0009873GO:GO:0042991GO:GO:0048366GO:GO:0048825
Gramene:AT5G53290.1hmmpanther:PTHR31194hmmpanther:PTHR31194:SF0HOGENOM:HOG000237664
InParanoid:Q9FK12IntAct:Q9FK12InterPro:IPR001471InterPro:IPR016177
InterPro:IPR017392KEGG:ath:AT5G53290OMA:EYIDFRPPANTHER:PTHR31194
PaxDb:Q9FK12Pfam:PF00847Pfam:Q9FK12Pfscan:PS51032
PhylomeDB:Q9FK12PRIDE:Q9FK12PRINTS:PR00367PRO:PR:Q9FK12
PROSITE:PS51032ProteinModelPortal:Q9FK12Proteomes:UP000006548RefSeq:NP_200141.1
SMART:SM00380SMR:Q9FK12STRING:3702.AT5G53290.1SUPFAM:SSF54171
TAIR:AT5G53290tair10-symbols:CRF3UniGene:At.49792UniProt:Q9FK12
Coordinates (TAIR10) chr5:-:21617961..21619025
Molecular Weight (calculated) 40102.20 Da
IEP (calculated) 4.29
GRAVY (calculated) -0.82
Length 354 amino acids
Sequence (TAIR10)
(BLAST)
001: MDEYIDFRPL KYTEHKTSMT KYTKKSSEKL SGGKSLKKVS ICYTDPDATD SSSDEDEEDF LFPRRRVKRF VNEITVEPSC NNVVTGVSMK DRKRLSSSSD
101: ETQSPASSRQ RPNNKVSVSG QIKKFRGVRQ RPWGKWAAEI RDPEQRRRIW LGTFETAEEA AVVYDNAAIR LRGPDALTNF SIPPQEEEEE EEPEPVIEEK
201: PVIMTTPTPT TSSSESTEED LQHLSSPTSV LNHRSEEIQQ VQQPFKSAKP EPGVSNAPWW HTGFNTGLGE SDDSFPLDTP FLDNYFNESP PEMSIFDQPM
301: DQIFCENDDI FNDMLFLGGE TMNIEDELTS SSIKDMGSTF SDFDDSLISD LLVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)