AT4G12350.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : myb domain protein 42 | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a putative transcription factor (MYB42). | ||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
myb domain protein 42 (MYB42); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 85 (TAIR:AT4G22680.1); Has 8783 Blast hits to 8115 proteins in 472 species: Archae - 0; Bacteria - 0; Metazoa - 778; Fungi - 398; Plants - 5939; Viruses - 6; Other Eukaryotes - 1662 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:+:7324912..7326636 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 32403.90 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.59 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.69 | ||||||||||||||||||||||||||||||||||||||||
Length | 286 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGRQPCCDKL MVKKGPWTAE EDKKLINFIL TNGHCCWRAL PKLAGLRRCG KSCRLRWTNY LRPDLKRGLL SDAEEQLVID LHALLGNRWS KIAARLPGRT 101: DNEIKNHWNT HIKKKLLKME IDPSTHQPLN KVFTDTNLVD KSETSSKADN VNDNKIVEID GTTTNTIDDS IITHQNSSND DYELLGDIIH NYGDLFNILW 201: TNDEPPLVDD ASWSNHNVGI GGTAAVAASD KNNTAAEEDF PERSFEKQNG ESWMFLDYCQ EFGVEDFGFE CYHGFGQSSM KTGHKD |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)