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AT4G12350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : myb domain protein 42
Curator
Summary (TAIR10)
Encodes a putative transcription factor (MYB42).
Computational
Description (TAIR10)
myb domain protein 42 (MYB42); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 85 (TAIR:AT4G22680.1); Has 8783 Blast hits to 8115 proteins in 472 species: Archae - 0; Bacteria - 0; Metazoa - 778; Fungi - 398; Plants - 5939; Viruses - 6; Other Eukaryotes - 1662 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AF175999EMBL:CP002687
EnsemblPlants:AT4G12350EnsemblPlants:AT4G12350.1entrez:826844Gene3D:1.10.10.60
GeneID:826844GO:GO:0003700GO:GO:0005634GO:GO:0006355
GO:GO:0044212GO:GO:2000652Gramene:AT4G12350.1hmmpanther:PTHR10641
hmmpanther:PTHR10641:SF674InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930
KEGG:ath:AT4G12350KO:K09422OMA:ILWTNDEPfam:PF00249
Pfscan:PS51294PhylomeDB:Q9SPG1PROSITE:PS51294Proteomes:UP000006548
RefSeq:NP_567390.4SMART:SM00717SMR:Q9SPG1STRING:3702.AT4G12350.1
SUPFAM:SSF46689TAIR:AT4G12350tair10-symbols:AtMYB42tair10-symbols:MYB42
UniGene:At.3609UniProt:Q9SPG1
Coordinates (TAIR10) chr4:+:7324912..7326636
Molecular Weight (calculated) 32403.90 Da
IEP (calculated) 5.59
GRAVY (calculated) -0.69
Length 286 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRQPCCDKL MVKKGPWTAE EDKKLINFIL TNGHCCWRAL PKLAGLRRCG KSCRLRWTNY LRPDLKRGLL SDAEEQLVID LHALLGNRWS KIAARLPGRT
101: DNEIKNHWNT HIKKKLLKME IDPSTHQPLN KVFTDTNLVD KSETSSKADN VNDNKIVEID GTTTNTIDDS IITHQNSSND DYELLGDIIH NYGDLFNILW
201: TNDEPPLVDD ASWSNHNVGI GGTAAVAASD KNNTAAEEDF PERSFEKQNG ESWMFLDYCQ EFGVEDFGFE CYHGFGQSSM KTGHKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)