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AT2G46310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cytokinin response factor 5
Curator
Summary (TAIR10)
CRF5 encodes one of the six cytokinin response factors. It is transcriptionally upregulated in response to cytokinin. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves.
Computational
Description (TAIR10)
cytokinin response factor 5 (CRF5); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 6 (TAIR:AT3G61630.1); Has 5622 Blast hits to 5574 proteins in 244 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5609; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
BioGrid:4574eggNOG:ENOG410JT8XeggNOG:ENOG411082VEMBL:AC005397
EMBL:AK227661EMBL:AY074638EMBL:BT003121EMBL:CP002685
EnsemblPlants:AT2G46310EnsemblPlants:AT2G46310.1entrez:819239Gene3D:3.30.730.10
GeneID:819239Genevisible:O82339GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0005737GO:GO:0006351GO:GO:0009736
GO:GO:0009793GO:GO:0009873GO:GO:0042991GO:GO:0048366
GO:GO:0048825Gramene:AT2G46310.1hmmpanther:PTHR31194hmmpanther:PTHR31194:SF16
HOGENOM:HOG000237664InParanoid:O82339IntAct:O82339InterPro:IPR001471
InterPro:IPR016177InterPro:IPR017392KEGG:ath:AT2G46310OMA:SHNDETE
PANTHER:PTHR31194PaxDb:O82339Pfam:O82339Pfam:PF00847
Pfscan:PS51032PhylomeDB:O82339PIR:C84901PRINTS:PR00367
PRO:PR:O82339PROSITE:PS51032ProteinModelPortal:O82339Proteomes:UP000006548
RefSeq:NP_182154.1SMART:SM00380SMR:O82339STRING:3702.AT2G46310.1
SUPFAM:SSF54171TAIR:AT2G46310tair10-symbols:CRF5UniGene:At.37025
UniProt:O82339
Coordinates (TAIR10) chr2:+:19011614..19012498
Molecular Weight (calculated) 33157.50 Da
IEP (calculated) 4.85
GRAVY (calculated) -0.68
Length 294 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSRVRKSKY TVHRKITSTP FDGFPKIVKI IVTDPCATDS SSDEENDNKS VAPRVKRYVD EIRFCDEDDE PKPARKAKKK SPAAAAENGG DLVKSVVKYR
101: GVRQRPWGKF AAEIRDPSSR TRLWLGTFAT AEEAAIGYDR AAIRIKGHNA QTNFLTPPPS PTTEVLPETP VIDLETVSGC DSARESQISL CSPTSVLRFS
201: HNDETEYRTE PTEEQNPFFL PDLFRSGDYF WDSEITPDPL FLDEFHQSLL PNINNNNTVC DKDTNLSDSF PLGVIGDFSS WDVDEFFQDH LLDK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)