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AT1G68550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT3G25890.2); Has 4835 Blast hits to 4832 proteins in 228 species: Archae - 0; Bacteria - 2; Metazoa - 14; Fungi - 3; Plants - 4809; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZPWeggNOG:ENOG410Z04JEMBL:AC011915EMBL:AY059782
EMBL:AY091303EMBL:CP002684EnsemblPlants:AT1G68550EnsemblPlants:AT1G68550.1
EnsemblPlants:AT1G68550.2entrez:843184Gene3D:3.30.730.10GeneID:843184
Genevisible:Q9CA27GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009873Gramene:AT1G68550.1Gramene:AT1G68550.2
hmmpanther:PTHR31194hmmpanther:PTHR31194:SF8HOGENOM:HOG000090785InParanoid:Q9CA27
InterPro:IPR001471InterPro:IPR016177InterPro:IPR017392KEGG:ath:AT1G68550
OMA:APINISCPANTHER:PTHR31194PaxDb:Q9CA27Pfam:PF00847
Pfam:Q9CA27Pfscan:PS51032PhylomeDB:Q9CA27PIR:G96709
PRIDE:Q9CA27PRINTS:PR00367PRO:PR:Q9CA27PROSITE:PS51032
ProteinModelPortal:Q9CA27Proteomes:UP000006548RefSeq:NP_177022.1RefSeq:NP_974106.1
SMART:SM00380SMR:Q9CA27STRING:3702.AT1G68550.1SUPFAM:SSF54171
TAIR:AT1G68550UniGene:At.21149UniProt:Q9CA27
Coordinates (TAIR10) chr1:-:25725810..25726784
Molecular Weight (calculated) 35570.30 Da
IEP (calculated) 4.34
GRAVY (calculated) -0.54
Length 324 amino acids
Sequence (TAIR10)
(BLAST)
001: MVAIRKEQSL SGVSSEIKKR AKRNTLSSLP QETQPLRKVR IIVNDPYATD DSSSDEEELK VPKPRKMKRI VREINFPSME VSEQPSESSS QDSTKTDGKI
101: AVSASPAVPR KKPVGVRQRK WGKWAAEIRD PIKKTRTWLG TFDTLEEAAK AYDAKKLEFD AIVAGNVSTT KRDVSSSETS QCSRSSPVVP VEQDDTSASA
201: LTCVNNPDDV STVAPTAPTP NVPAGGNKET LFDFDFTNLQ IPDFGFLAEE QQDLDFDCFL ADDQFDDFGL LDDIQGFEDN GPSALPDFDF ADVEDLQLAD
301: SSFGFLDQLA PINISCPLKS FAAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)