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AT1G25470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AP2 domain-containing transcription factor family protein
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
Computational
Description (TAIR10)
AP2 domain-containing transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Pathogenesis-related genes transcriptional activator PTI6 (InterPro:IPR017392), DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G68550.2); Has 2801 Blast hits to 2801 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2796; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
BioGrid:24370eggNOG:ENOG410JKI1eggNOG:ENOG41115X1EMBL:AC079281
EMBL:AK119144EMBL:BT005281EMBL:CP002684EnsemblPlants:AT1G25470
EnsemblPlants:AT1G25470.1EnsemblPlants:AT1G25470.2entrez:839133Gene3D:3.30.730.10
GeneID:839133Genevisible:Q8GW17GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009555GO:GO:0009873
Gramene:AT1G25470.1Gramene:AT1G25470.2hmmpanther:PTHR31194hmmpanther:PTHR31194:SF0
HOGENOM:HOG000090785InParanoid:Q8GW17IntAct:Q8GW17InterPro:IPR001471
InterPro:IPR016177InterPro:IPR017392KEGG:ath:AT1G25470OMA:STRIWIG
PANTHER:PTHR31194PaxDb:Q8GW17Pfam:Q8GW17Pfscan:PS51032
PhylomeDB:Q8GW17PIR:H86384PIRSF:PIRSF038123PRIDE:Q8GW17
PRO:PR:Q8GW17PROSITE:PS51032ProteinModelPortal:Q8GW17Proteomes:UP000006548
RefSeq:NP_173918.2RefSeq:NP_973912.1SMART:SM00380SMR:Q8GW17
STRING:3702.AT1G25470.1SUPFAM:SSF54171TAIR:AT1G25470UniGene:At.41335
UniGene:At.68159UniProt:Q8GW17
Coordinates (TAIR10) chr1:-:8944901..8945764
Molecular Weight (calculated) 31993.10 Da
IEP (calculated) 4.56
GRAVY (calculated) -0.48
Length 287 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSFVKPERD SLLRTVRIVF TDPDATDDSS SSSDEWLPKP RKVKRFVHEI TFLPQVSESS QDRSNAVKTP RRKSTRQFKY PVGVRPRPSG KFAAEILNPF
101: TKTKKWLGTY ETPAEAEKAY VDKKVEYDAL ASSGSAVSSS VVTVTSQCLR SPTSASVSCV SADDLSKEKT SLNKDVAASG DSTTKEVFTT FDFSDVKIPD
201: LRFLAAEEDS MVSNANGAEL DFDCFLTDSN ILLDDYSLLE NDINFSRFEN SLPSELPDCD FTEMEFQLDD FKFAYTDHLT TPPLGLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)