AT1G25470.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : AP2 domain-containing transcription factor family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
AP2 domain-containing transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Pathogenesis-related genes transcriptional activator PTI6 (InterPro:IPR017392), DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G68550.2); Has 2801 Blast hits to 2801 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2796; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:8944901..8945764 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 31993.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.56 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 287 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKSFVKPERD SLLRTVRIVF TDPDATDDSS SSSDEWLPKP RKVKRFVHEI TFLPQVSESS QDRSNAVKTP RRKSTRQFKY PVGVRPRPSG KFAAEILNPF 101: TKTKKWLGTY ETPAEAEKAY VDKKVEYDAL ASSGSAVSSS VVTVTSQCLR SPTSASVSCV SADDLSKEKT SLNKDVAASG DSTTKEVFTT FDFSDVKIPD 201: LRFLAAEEDS MVSNANGAEL DFDCFLTDSN ILLDDYSLLE NDINFSRFEN SLPSELPDCD FTEMEFQLDD FKFAYTDHLT TPPLGLV |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)