suba logo
AT4G10130.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNAJ heat shock N-terminal domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Zinc finger, DPH-type (InterPro:IPR007872); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT3G13310.1); Has 18672 Blast hits to 18671 proteins in 2948 species: Archae - 158; Bacteria - 7534; Metazoa - 3304; Fungi - 1856; Plants - 1763; Viruses - 10; Other Eukaryotes - 4047 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0484eggNOG:KOG0714EMBL:AF096373EMBL:AL049487
EMBL:AL161516EMBL:AY065394EMBL:AY096727EMBL:CP002687
EnsemblPlants:AT4G10130EnsemblPlants:AT4G10130.1entrez:826604Gene3D:1.10.287.110
GeneID:826604Gramene:AT4G10130.1hmmpanther:PTHR21454hmmpanther:PTHR21454:SF4
HOGENOM:HOG000242866InterPro:IPR001623InterPro:IPR007872KEGG:ath:AT4G10130
KO:K17867OMA:HPDKAQMPfam:PF00226Pfam:PF05207
Pfscan:PS50076Pfscan:PS51074PhylomeDB:O82623PIR:T01980
PRINTS:PR00625PRO:PR:O82623PROSITE:PS50076PROSITE:PS51074
Proteomes:UP000006548RefSeq:NP_192751.1SMART:SM00271SMR:O82623
STRING:3702.AT4G10130.1SUPFAM:SSF144217SUPFAM:SSF46565TAIR:AT4G10130
UniGene:At.28502UniProt:O82623
Coordinates (TAIR10) chr4:-:6320959..6321483
Molecular Weight (calculated) 19686.10 Da
IEP (calculated) 4.38
GRAVY (calculated) -0.20
Length 174 amino acids
Sequence (TAIR10)
(BLAST)
001: MLVGENCVHE TYYEILSVKE DASYEEIRNS YRSAILHSHP DKLNNTSRSS SDDEKFLKIQ KAWEVLSDAE LRVVYDNDLR SSRHDGITAD EISIEDMSVE
101: ITGDVIDLFY QCRCGDYFCV DSSELGTMGF ALLRDGDFVY VKRLGAFVAS VVLPCGSCSL KTRVWVDSDM KIPI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)