AT3G42630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G14190.1); Has 5690 Blast hits to 3414 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 5631; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:14722314..14723635 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47724.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.20 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.03 | ||||||||||||||||||||||||||||||||||||||||
| Length | 415 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLSLNLSLKP QHLKLLSCYT DSSAPSIAKK LIKESKLSRD FSQKIQIVDY APLVQTLSQR RLPDVAHEIF LQTKSVNLLP NYRTLCALML CFAENGFVLR 101: ARTIWDEIIN SCFVPDVFVV SKLISAYEQF GCFDEVAKIT KDVAARHSKL LPVVSSLAIS CFGKNGQLEL MEGVIEEMDS KGVLLEAETA NVIVRYYSFF 201: GSLDKMEKAY GRVKKFGIVI EEEEIRAVVL AYLKQRKFYR LREFLSDVGL GRRNLGNMLW NSVLLSYAAD FKMKSLQREF IGMLDAGFSP DLTTFNIRAL 301: AFSRMALFWD LHLTLEHMRR LNIVPDLVTF GCVVDAYMDK RLARNLEFVY NRMNLDDSPL VLTDPLAFEV LGKGDFHLSS EAVLEFSPRK NWTYRKLIGV 401: YLKKKLRRDQ IFWNY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)