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AT3G60350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARABIDILLO-2
Curator
Summary (TAIR10)
ARABIDILLO-2 and its homolog, ARABIDILLO -1, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-2 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-2-overexpressing lines produce more lateral roots than wild-type seedlings.
Computational
Description (TAIR10)
ARABIDILLO-2 (ARABIDILLO-2); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARABIDILLO-1 (TAIR:AT2G44900.1); Has 10264 Blast hits to 5575 proteins in 291 species: Archae - 0; Bacteria - 64; Metazoa - 4302; Fungi - 778; Plants - 4057; Viruses - 0; Other Eukaryotes - 1063 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHA3eggNOG:ENOG410ZZ0BEMBL:AL138646EMBL:CP002686
EnsemblPlants:AT3G60350EnsemblPlants:AT3G60350.1entrez:825206Gene3D:1.25.10.10
Gene3D:3.80.10.10GeneID:825206Genevisible:Q9M224GO:GO:0005634
GO:GO:0048527Gramene:AT3G60350.1hmmpanther:PTHR23315hmmpanther:PTHR23315:SF91
HOGENOM:HOG000029512InParanoid:Q9M224InterPro:IPR000225InterPro:IPR001810
InterPro:IPR006553InterPro:IPR011989InterPro:IPR016024InterPro:IPR032675
iPTMnet:Q9M224KEGG:ath:AT3G60350OMA:MDEYAMIPaxDb:Q9M224
Pfam:PF00514Pfam:PF12937Pfam:Q9M224Pfscan:PS50176
Pfscan:PS50181PhylomeDB:Q9M224PIR:T47846PRIDE:Q9M224
PRO:PR:Q9M224PROSITE:PS50176PROSITE:PS50181ProteinModelPortal:Q9M224
Proteomes:UP000006548RefSeq:NP_191594.1SMART:SM00185SMART:SM00256
SMART:SM00367SMR:Q9M224STRING:3702.AT3G60350.1SUPFAM:SSF48371
SUPFAM:SSF52047TAIR:AT3G60350tair10-symbols:ARABIDILLO-2tair10-symbols:ARABIDILLO2
UniGene:At.48788UniGene:At.63623UniProt:Q9M224
Coordinates (TAIR10) chr3:-:22306806..22310596
Molecular Weight (calculated) 100751.00 Da
IEP (calculated) 7.03
GRAVY (calculated) -0.01
Length 928 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRRVRQRVE DNGKYKVDSP SYTVIGVEDL APKVQQYVNW TSLPYDTVFH LFTRLNYRDR ASLASTCRTW RSLGASSFLW SSLDLRAHKF DLSMAASLAT
101: RCVDLQKIRF RGVDSADAII HLKARSLLEI SGDYCRKITD ATLSMIAARH EALESLQLGP DFCERITSDA IRVIAFCCPK LKKLRVSGMR DVSSEAIESL
201: AKHCPQLSDL GFLDCLNINE EALGKVVSLR YLSVAGTSNI KWKVALENWE KLPKLIGLDV SRTTIDHIAV SRLLKSSQSL KVLCALNCPY LEEDKSYSSN
301: RFKGKVLLAV FTDTFDELAS IFADNSKKPK NIFSYWRDLI RKDKSIDEIM LWIEWIISHT LLRIAESSNS QGLNDFWLNQ GATLLLSLMQ SAQEDVQERA
401: ATGLATFIVV DDENASIDCG RAEAVMRDGG IRLLLELAKS WREGLQSEAA KAIANLSVNA KVAKAVAEEG GISVLADLAK SMNRLVAEEA AGGLWNLSVG
501: EEHKNAIAQA GGVNALVDLI FRWPHGCDGV LERAAGALAN LAADDKCSME VARAGGVHAL VMLARNCKYE GAQEQAARAL ANLAAHGDSN GNNAAVGQEA
601: GALEALVQLT QSPHEGVKQE AAGALWNLAF DDKNRESIAA FGGVEALVAL AKSSSNASTG LQERVAGALW GLSVSEANSI AIGHEGGIPP LIALVRSEAE
701: DVHETAAGAL WNLSFNPGNA LRIVEEGGVV ALVQLCSSSV SKMARFMAAL ALAYMFDGRM DEYAMIGTSL ESTSKSVTLN GARTMALDQI KAFIKTFMEH
801: QIFSTGALSS APSMLAQVSE RARIPEAGHL RCSGSEIGRF VTMLRNPCLV LRACAAFALL QFTIPESRHA MHHASLMQNA GEARGLRSAA AAASMPREAK
901: IFMKIVLRNL EHQQAESPEG MKVSYNRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)