AT4G05420.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : damaged DNA binding protein 1A | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
damaged DNA binding protein 1A (DDB1A); FUNCTIONS IN: protein binding, DNA binding; INVOLVED IN: negative regulation of transcription, negative regulation of photomorphogenesis; LOCATED IN: nucleus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: damaged DNA binding protein 1B (TAIR:AT4G21100.1); Has 1490 Blast hits to 1182 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 604; Fungi - 374; Plants - 231; Viruses - 0; Other Eukaryotes - 281 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:2746288..2752663 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 121313.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.94 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1088 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI 0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL YQDNKDARHV KTYEVSLKDK 0201: DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET 0301: SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK 0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR DEWHAPAGFT VNVATANASQ 0501: VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL 0601: GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD 0701: IQKLHIRTIP LGEHARRICH QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK NVYYCVGTAY VLPEENEPTK 0801: GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA 0901: IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS 1001: LPQEQYTFLE KLQSSLRKVI KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR VEELTRLH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)