AT1G19750.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G27840.1); Has 24643 Blast hits to 15569 proteins in 571 species: Archae - 22; Bacteria - 3931; Metazoa - 8671; Fungi - 5946; Plants - 3099; Viruses - 0; Other Eukaryotes - 2974 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6826997..6830061 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49999.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.26 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 450 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MWKAFKDRET GRFRSNSFAN RFKSRRILSL QLSNRKDFVS PHRGSVNSLQ VDLTEGRYLL SGAADGSAAV FDVKRATDYE ASGLIAKHKC IFTVRKQHEN 101: GHKYAISSAI WYPIDTGMFI TGSFDHYVKV WDTNTSQVVV DFKMPGKVYR TAMSSMAMSH TLIAAGTDDV QVRLCDIASG AFSHTLSGHR DGVMSVEWST 201: SSEWVLYTGG CDGAIRFWDI RRAGCFRVLD NSQTQLGVRP PILKRPAVSS KFFSAAKSSL GDQNWLKTLQ SKHTGSQSVK GSSSEKPSVE KSRQKRIHPG 301: MLSTLDRATA HYGVVTGLKA TNDGMYLLSA GSYSRIRLWD IESGRNTLVN FETGRIQTDR AIQLDTSDDP ALVFVPCMKT VKGFGMWSGR TTLMLRGHYE 401: SVNTCCFNSN DQELYTSGAD RQIIVWSPGG SVEDEMAQGE VAEDKDNWSD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)