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AT2G19520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transducin family protein / WD-40 repeat family protein
Curator
Summary (TAIR10)
Controls flowering.
Computational
Description (TAIR10)
FVE; FUNCTIONS IN: metal ion binding; INVOLVED IN: flower development, unidimensional cell growth, trichome morphogenesis, leaf morphogenesis; LOCATED IN: nucleolus, nucleus, CUL4 RING ubiquitin ligase complex, cytoplasm; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Histone-binding protein RBBP4 (InterPro:IPR022052), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: nucleosome/chromatin assembly factor group C5 (TAIR:AT4G29730.1); Has 27643 Blast hits to 19007 proteins in 669 species: Archae - 18; Bacteria - 3366; Metazoa - 11144; Fungi - 6221; Plants - 3473; Viruses - 0; Other Eukaryotes - 3421 (source: NCBI BLink).
Protein Annotations
BioGrid:1826DIP:DIP-59614NeggNOG:ENOG410XNU9eggNOG:KOG0264
EMBL:AC005917EMBL:AF028711EMBL:AF498101EMBL:AF498102
EMBL:AY057655EMBL:AY059799EMBL:AY081447EMBL:AY849994
EMBL:CP002685EMBL:Z37286EMBL:Z37287EnsemblPlants:AT2G19520
EnsemblPlants:AT2G19520.1entrez:816471Gene3D:2.130.10.10GeneID:816471
Genevisible:O22607GO:GO:0005634GO:GO:0005730GO:GO:0005737
GO:GO:0005829GO:GO:0006281GO:GO:0006351GO:GO:0006355
GO:GO:0009908GO:GO:0010224GO:GO:0016568GO:GO:0030154
GO:GO:0046872GO:GO:0080008Gramene:AT2G19520.1hmmpanther:PTHR22850
hmmpanther:PTHR22850:SF85HOGENOM:HOG000160330InParanoid:O22607IntAct:O22607
InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986InterPro:IPR022052
iPTMnet:O22607KEGG:ath:AT2G19520KO:K10752OMA:VDEKYSQ
PaxDb:O22607Pfam:O22607Pfam:PF00400Pfam:PF12265
Pfscan:PS50082Pfscan:PS50294PhylomeDB:O22607PIR:G84577
PRIDE:O22607PRO:PR:O22607PROSITE:PS50082PROSITE:PS50294
ProteinModelPortal:O22607Proteomes:UP000006548RefSeq:NP_565456.2SMART:SM00320
SMR:O22607STRING:3702.AT2G19520.1SUPFAM:SSF50978TAIR:AT2G19520
tair10-symbols:ACG1tair10-symbols:ATMSI4tair10-symbols:FVEtair10-symbols:MSI4
tair10-symbols:NFC04tair10-symbols:NFC4UniGene:At.20032UniProt:O22607
Coordinates (TAIR10) chr2:+:8456006..8459235
Molecular Weight (calculated) 55761.90 Da
IEP (calculated) 6.17
GRAVY (calculated) -0.60
Length 507 amino acids
Sequence (TAIR10)
(BLAST)
001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)