suba logo
AT4G22250.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G03965.1); Has 910 Blast hits to 910 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 334; Fungi - 67; Plants - 314; Viruses - 43; Other Eukaryotes - 152 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J21AeggNOG:ENOG410YP5GEMBL:AK118292EMBL:BT005602
EMBL:CP002687EnsemblPlants:AT4G22250EnsemblPlants:AT4G22250.1entrez:828320
Gene3D:3.30.40.10GeneID:828320GO:GO:0008270Gramene:AT4G22250.1
hmmpanther:PTHR12183HOGENOM:HOG000015147IntAct:Q8GXD8InterPro:IPR001841
InterPro:IPR013083KEGG:ath:AT4G22250OMA:MSHHIHTPfam:PF13920
Pfscan:PS50089PhylomeDB:Q8GXD8PROSITE:PS50089Proteomes:UP000006548
RefSeq:NP_193956.2SMART:SM00184SMR:Q8GXD8STRING:3702.AT4G22250.1
SUPFAM:SSF57850TAIR:AT4G22250UniGene:At.32554UniProt:Q8GXD8
Coordinates (TAIR10) chr4:-:11767685..11768329
Molecular Weight (calculated) 24061.90 Da
IEP (calculated) 6.04
GRAVY (calculated) -0.43
Length 214 amino acids
Sequence (TAIR10)
(BLAST)
001: MMSELDLGTS QRMTETHRTT TTFLDLLRRQ MSGHDLTRRK RTLKERLRFK CIGCCGPTWN LRLTNNTTLH SPTSRDDEIE ELQIETGLVL ESDHGSGTGM
101: NLATALEAER YNRGESTEAE ADMTPRRVSL MRLLEETAEK IVDDDGKETE ILTASIGTLT GNDSVCCVCM GRKKGAAFIP CGHTFCRVCS RELWLNRGSC
201: PLCNRPIIEI LDIF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)