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AT1G27840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Encodes a DDB1a interacting protein ATCSA-1 required for UV-B tolerance and genomic integrity.
Computational
Description (TAIR10)
ATCSA-1; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G19750.1); Has 28727 Blast hits to 16574 proteins in 608 species: Archae - 26; Bacteria - 4830; Metazoa - 10091; Fungi - 6796; Plants - 3577; Viruses - 0; Other Eukaryotes - 3407 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z0MQeggNOG:KOG4283EMBL:AY057556EMBL:AY074265
EMBL:AY096624EMBL:CP002684EnsemblPlants:AT1G27840EnsemblPlants:AT1G27840.1
entrez:839677ExpressionAtlas:Q93ZG3Gene3D:2.130.10.10GeneID:839677
Gramene:AT1G27840.1hmmpanther:PTHR22850hmmpanther:PTHR22850:SF2HOGENOM:HOG000248233
InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775
InterPro:IPR020472Pfam:PF00400Pfscan:PS50082Pfscan:PS50294
PhylomeDB:Q93ZG3PRINTS:PR00320PROSITE:PS00678PROSITE:PS50082
PROSITE:PS50294Proteomes:UP000006548Reactome:R-ATH-6781823Reactome:R-ATH-6782135
Reactome:R-ATH-6782210RefSeq:NP_174105.2scanprosite:PS00678SMART:SM00320
SMR:Q93ZG3STRING:3702.AT1G27840.3SUPFAM:SSF50978TAIR:AT1G27840
tair10-symbols:ATCSA-1UniGene:At.17206UniGene:At.51683UniProt:Q93ZG3
Coordinates (TAIR10) chr1:-:9693332..9696257
Molecular Weight (calculated) 49656.60 Da
IEP (calculated) 8.80
GRAVY (calculated) -0.39
Length 450 amino acids
Sequence (TAIR10)
(BLAST)
001: MWEAIKDRET GRIRSNSFAN RFKSRRILSL QLSNRKDFVS PHRGSVNSLQ VDLTEGRYLL SGAADGSAAV FDVQRATDYE ASGLIAKHKC IFTVDKQHEN
101: GHKYAISSAI WYPIDTGLFI TGSFDHYLKV WDTNTAQAVV DFKMPGKVYR TAMSSMAMSH TLIAAGTEDV QVRLCDIASG AFSHTLSGHR DGVMSVEWST
201: SSEWVLYTGG CDGAIRFWDI RRAGCFRVLD QSQTQLGFRP PILKRTAVGS KLSSVAKSSL GGQNRLKTLQ SKQTGSQSVK GSSSAKASVE KSRQKRIHPG
301: MLSTLDRATA HYGAVTGLKA TNDGMYLLSA GSDSRIRLWD IESGRNTLVN FETGRIQTNK GIQLDTSDDP ALVFVPCMKT VKAFGMWSGR TTLMLRGHYE
401: SVNTCCFNSN DQELYTSGSD RQILVWSPGG TVEDEMVQDE VAEDKDNWSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)