AT3G19670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pre-mRNA-processing protein 40B | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Binds the carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold for RNA processing machineries. Ubiquitously expressed and localize to the nucleus. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
pre-mRNA-processing protein 40B (PRP40B); FUNCTIONS IN: RNA polymerase binding; INVOLVED IN: RNA splicing; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: FF domain (InterPro:IPR002713), WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: pre-mRNA-processing protein 40A (TAIR:AT1G44910.1); Has 12458 Blast hits to 9290 proteins in 504 species: Archae - 82; Bacteria - 460; Metazoa - 6303; Fungi - 1179; Plants - 857; Viruses - 9; Other Eukaryotes - 3568 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:6828242..6836582 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 113575.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.91 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.01 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 992 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANNHQYPGI QPFQHPNASS IDLPRGFAPP MNFQFLPTIQ APQSEQVARL SSQNFQCVGR GGTVLSIGYP PQSYAPQLLQ SMHHSHERPS QLNQVQVQHV 101: PLGPPTLISQ PNVSIASGTS LHQPYVQTPD IGMPGFGGPR ALFSYPSATS YEGSRVPPQV TGPSIHSQAQ QRASIIHTSA ESSIMNPTFE QPKAAFLKPL 201: PSQKALTDWV EHTSADGRKY FFNKRTKKST WEKPVELMTL FERADARTDW KEHSSPDGRK YYYNKITKQS TWTMPEEMKI VREQAEIASV QGPHAEGIID 301: ASEVLTRSDT ASTAAPTGLP SQTSTSEGVE KLTLTSDLKQ PASVPGSSSP VENVDRVQMS ADETSQLCDT SETDGLSVPV TETSAATLVE KDEISVGNSG 401: DSDDMSTKNA NQGSGSGPKE SQKPMVESEK VESQTEEKQI HQESFSFNNK LEAVDVFKSL LKSAKVGSDW TWEQAMREII NDKRYGALRT LGERKQAFNE 501: FLLQTKRAAE EERLARQKKL YEDFKRMLEE CVELTPSTRW SKTVTMFEDD ERFKALEREK DRRNIFEDHV SELKEKGRVK ALEDRKRNII EYKRFLESCN 601: FIKPNSQWRK VQDRLEVDER CSRLEKIDQL EIFQEYLRDL EREEEEKKKI QKEELKKVER KHRDEFHGLL DEHIATGELT AKTIWRDYLM KVKDLPVYSA 701: IASNSSGATP KDLFEDAVED LKKRDHELKS QIKDVLKLRK VNLSAGSTFD EFKVSISEDI GFPLIPDVRL KLVFDDLLER AKEKEEKEAR KQTRQTEKLV 801: DMLRSFKDIT ASSSWEELKH LVEGSEKCST IGDESFRKRC FEDYVSLLKE QSNRIKQNKK VPEDVREEHD KGRDKYGREK DRVRERDSDD HHKKGAAGKY 901: NHDMNEPHGK ERRRSGRDSH NRHRERHTSV KENDTDHFKE SHKAGGGHKK SRHQRGWVSE AEVEGKEKRR RKEEAREHTK EEELEDGECG RY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)