AT1G60200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Splicing factor PWI (InterPro:IPR002483); Has 135188 Blast hits to 78111 proteins in 2910 species: Archae - 381; Bacteria - 16050; Metazoa - 59921; Fungi - 15870; Plants - 11369; Viruses - 1556; Other Eukaryotes - 30041 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:22200882..22205241 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 101503.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.43 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.07 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 899 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADESSSPAT GDPNSQKPES TTPISIPNPN PNPSLTPPPP QQHSQPPVAP LVPPGPPYAP PAQIPSSLLP TNLPPPPPFR PGMQFTPVAN FQNPSSGVPP 101: PGSMPQYQPQ PGMRPFQPMA NGYPGIHGVA PPGAMPPHGL LRYPSPYPTM VRPGFIMRPP GTIGAVQLAP RPLIPGMPGL RPVMPPMVRP ASLPFVTPAE 201: KPQTTIYIGK IATVENDFMM SILEFCGHVK SCLRAEDPTT KKPKGFGFYE FESAEGILRA IRLLTQRTID GQELLVNVNQ ATKEYLLKYV EKKIETAKKA 301: KESQGTKENQ AEGPESEQDK LESADNETGK DGESKIKENI DIANSAVLTD EEREADREAM EKIETAIEER LKSNPLPPPP PPPADGSGME FAFKSKDGDS 401: NTDVARSDAA ANDVETSGEH NRPDTSSPDW SKRNDRRSRE RGEKEQEMDR YEREAERERS RKEREQRRKL EDAERAYQTR LRQWERRERE KEKERQYEKE 501: KEKEKERKRK KEIRYEEEEE EDDDDSRRRW HRAALDERRR RQLREKEDDL ADRLKEEEEV AEAKRSAEEQ NLQQQQLDAL RILSGQAAIG SETVQTSPIE 601: NDHKATLQTV GESANEHHAA DFEENGSGNE SMAIDNNSGS EAHAPSKKLG FGLVGSGKRT SVPSVFYEED EDEARKAKKM KPLVPIDYST EEQEAVAHGG 701: SGNTPPHLAL AAEFAKRISS TNPKEETIET EKQRSRRSHD KASHRDRERE RERDRDRDRV RDRGDGHSGP TKDAKESGKA KIIDTKFLDA KQLIDTIPKT 801: KEDLFSYEIN WAMYDKHQVH ERMRPWISKK IMEFLGEEEA TLVDFIVSNT QQHVQASQML ELLQSILDEE AEMFVLKMWR MLIFEIKRVE AGVPVKSKA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)