AT1G10890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: petal, flower, leaf; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13340.1); Has 11769 Blast hits to 8435 proteins in 698 species: Archae - 22; Bacteria - 971; Metazoa - 5937; Fungi - 1065; Plants - 592; Viruses - 101; Other Eukaryotes - 3081 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:3628081..3630545 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34573.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 11.13 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.76 | ||||||||||||||||||||||||||||||||
| Length | 288 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPRDLSRSRS PSPSPSRRRK HSRSPVRQRH SRRSRRDRSP SPYSSHSYSR RKSRSISPRR HRSRSVTPKR RSPTPKRYKR QKSRSSTPSP AKRSPAATLE 101: SAKNRNGEKL KREEEERKRR QREAELKLIE EETVKRVEEA IRKKVEESLQ SEKIKMEILT LLEEGRKRLN EEVAAQLEEE KEASLIEAKE KEGVMRCLSQ 201: EREQQEKEER ERIAEENLKR VEEAQRKEAM ERQRKEEERY RELEELQRQK EEAMRRKKAE EEEERLKQMK LLGKNKSRPK LSFALSSK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)