AT1G15200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: cytoskeleton,cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : protein-protein interaction regulator family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
protein-protein interaction regulator family protein; CONTAINS InterPro DOMAIN/s: Pinin/SDK/memA protein (InterPro:IPR006786); Has 5330 Blast hits to 4034 proteins in 383 species: Archae - 10; Bacteria - 289; Metazoa - 2328; Fungi - 484; Plants - 229; Viruses - 50; Other Eukaryotes - 1940 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:5228477..5231017 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 48908.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.45 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.31 | ||||||||||||||||||||||||
| Length | 423 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGDTALEKTA EELRHEIDEL HRQQREITER LRDPRGLRRG GFSNVAPRNQ GRRGFPRPAE RNDVEDEPPA KRRLSSAVVK VDGEDVSKDG EFPVDGNGTQ 101: VKVGENGTSD QSDKKQSGLH RGSWSQRDAE QRRTNKRYEA FALPEPAPRV LPKNEDPKLV NRNRRMLGNL LGTLEKFRKE DKQRSGTDAY ARRTAALQRA 201: EEKAREESER LRLQERENLT EKRRRDLTLR ARVAAKAEQK KLELLFLQWS EHQKKLSNFI RTKAEPRIYY APVKPLEEDT SEVEQQKERT FLEWKAARRQ 301: EVSEYQKEIE EQCLGNVEKE LERWQNARKA RKANNEGMNL QETMDKELET HRMEHGPKKR KIPGGGVGDE DEEDEVEDIN GGEDEMIMDD LLEEGGDGTI 401: KEEVATDTVK AEAVEEDIKH EVL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)