AT5G09880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Splicing factor, CC1-like | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Splicing factor, CC1-like; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Splicing factor, CC1-like (InterPro:IPR006509), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Splicing factor, CC1-like (TAIR:AT2G16940.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:3081646..3085179 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59384.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.63 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.97 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 527 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEFDEYEYLE KTVEEGAGSN KKKEESGNER SERSYRKREG GERQGEEGGE EERVSSRSKK SRGDGEENGG GKRDRERERH RSSRDKDRER DKVREGSRDK 101: ESDRERSSKE RDRSDRDKPR DRERREREKR SSSRSRREEK EPEVVERGSR RHRDKKDEPE ADPERDQRTV FAYQMPLKAT ERDVYEFFSK AGKVRDVRLI 201: MDRNSRRSKG VGYIEFYDVM SVPMAIALSG QLFLGQPVMV KPSEAEKNLA QSNSTTVGGT GPADRKLYVG NLHFNMSELQ LRQIFEAFGP VELVQLPLDP 301: ETGQCKGFGF IQFVQLEHSK AAQIALNGKL EIAGRTIKVS SVSDHIGTQD SAPKSADFDD DDGGGLALNA QSRAMLMQKL DRSGIATSIV GSLGVPGLNG 401: AAFNQPGMNP SFPTSVLPTT AIPSFVNEHV GLPSECLLLK NMFDPATETE PNFDLEIRDD VADECSKYGP VNHIYVDKNS AGFVYLRFQS VEAAAAAQRA 501: MHMRWFAQKM ISATFMPPHE YEAKAKA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)