suba logo
AT3G03340.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : LUC7 related protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unfertilized embryo sac 6 (UNE6); CONTAINS InterPro DOMAIN/s: LUC7 related (InterPro:IPR004882); BEST Arabidopsis thaliana protein match is: LUC7 related protein (TAIR:AT5G17440.1); Has 25128 Blast hits to 10547 proteins in 429 species: Archae - 23; Bacteria - 333; Metazoa - 14905; Fungi - 3154; Plants - 2060; Viruses - 86; Other Eukaryotes - 4567 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5200eggNOG:KOG0796EMBL:CP002686EnsemblPlants:AT3G03340
EnsemblPlants:AT3G03340.1entrez:821276GeneID:821276GO:GO:0003729
GO:GO:0005685GO:GO:0005829GO:GO:0006376GO:GO:0009567
GO:GO:0071004Gramene:AT3G03340.1hmmpanther:PTHR12375hmmpanther:PTHR12375:SF32
InParanoid:F4IZU3InterPro:IPR004882KEGG:ath:AT3G03340ncoils:Coil
OMA:MKEADIHPANTHER:PTHR12375PaxDb:F4IZU3Pfam:PF03194
PRIDE:F4IZU3ProteinModelPortal:F4IZU3Proteomes:UP000006548RefSeq:NP_566203.2
STRING:3702.AT3G03340.1TAIR:AT3G03340tair10-symbols:UNE6UniGene:At.40999
UniProt:F4IZU3
Coordinates (TAIR10) chr3:+:786439..789762
Molecular Weight (calculated) 47358.00 Da
IEP (calculated) 8.89
GRAVY (calculated) -1.21
Length 402 amino acids
Sequence (TAIR10)
(BLAST)
001: MDAIRKQLDV LMGANRNGDV QEVNRKYYDR DVCRLYLSGL CPHDLFQLTK MDMGPCPKVH SLQLRKEYRE ARAKGVDNYD RELEDAIDRL IVECDRKIGR
101: ALKRLQEEDA KAAIAISVSE VTQSPEILEL SEKIKEKMKE ADIHDLEGKM DLKIRALELV EEMRTKRADQ QAVLLLEAFN KDRASLPQPV PAQPPSSELP
201: PPDPRTQEMI NEKLKKAEDL GEQGMVDEAQ KALEEAEALK KLTVRREPPA DSTKYTAVDV RITDQKLRLC DICGAFLSVY DSDRRLADHF GGKLHLGYML
301: VRDKLTELLD EKANIRKERS KERNSKERES SKDREKEQET SREHRRDYDR RSRDRDRHHD RDREQDRDYD RSHSRSRRRS RSRSRSRDRP RDYDRHRRHN
401: RY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)