AT1G28060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pre-mRNA-splicing factor 3 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pre-mRNA-splicing factor 3; CONTAINS InterPro DOMAIN/s: Pre-mRNA-splicing factor 3 (InterPro:IPR013881); BEST Arabidopsis thaliana protein match is: Pre-mRNA-splicing factor 3 (TAIR:AT3G55930.1); Has 22923 Blast hits to 12760 proteins in 707 species: Archae - 18; Bacteria - 1085; Metazoa - 11525; Fungi - 3053; Plants - 1999; Viruses - 93; Other Eukaryotes - 5150 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:9779167..9782486 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 88642.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.10 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.07 | ||||||||||||||||||||||||||||||||||||
| Length | 786 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDKERYSRSH RDDRDRDSSP DHSPQREGGR RRDRDVDSKR RDSDHYRSSR RGDREDERDR TKDRRGRSVE RGEREGSRDR EKHHHERSHE GSKEKESRSK 101: RKDREEENGA RDGKKKSRFA DGNGERRSRF EDVAIEVENK DAQVSEGSGA TNPTSGVTMG ASTYSSIPSE ASAAPSQTLL TKVSSISTTD ENKASVVRSH 201: EVPGKSSTDG RPLSTAGKSS ANLPLDSSAL AAKARKALQL QKGLADRLKN LPLLKKATKP TSEGSPHTRV PPSTTTPAVS TGTSFASTLP HTGLAGFGSI 301: ANIEAVKRAQ ELAANMGFHQ DREFAPVINL FPGQAPSDMT VAQRPEKPPV LRVDALGREI DEHGNVISVT KPSNLSTLKV NINKKKKDAF QILKPQLEAD 401: LKENPYFDTR MGIDEKKILR PKRMSFQFVE EGKWTRDAEN LKFKSHFGEA KAKELKVKQA QLAKANDDIN PNLIEVSERV PRKEKPKEPI PDVEWWDANV 501: LTNGEYGEIT DGTITESHLK IEKLTHYIEH PRPIEPPAEA APPPPQPLKL TKKEQKKLRT QRRLAKEKEK QEMIRQGLLE PPKAKVKMSN LMKVLGSEAT 601: QDPTKLEKEI RTAAAEREQA HTDRNAARKL TPAEKREKKE RKLFDDPTTV ETIVSVYKIK KLSHPKTRFK VEMNARENRL TGCSVMTDEM SVVVVEGKSK 701: AIKRYGKLMM KRINWEEAER KEGNEDEEEE VNGGNKCWLV WQGSIGKPSF HRFHVHECVT ESTAKKVFMD AGVVHYWDLA VNYSDD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)