AT2G26460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RED family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes SMU2, a protein involved in RNA splicing. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SUPPRESSORS OF MEC-8 AND UNC-52 2 (SMU2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA splicing; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RED-like, N-terminal (InterPro:IPR012916), RED-like, C-terminal (InterPro:IPR012492); Has 470 Blast hits to 361 proteins in 150 species: Archae - 0; Bacteria - 2; Metazoa - 251; Fungi - 94; Plants - 62; Viruses - 3; Other Eukaryotes - 58 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:11255049..11258913 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66334.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.85 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.08 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 585 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKPSKSHHKE KTARRREEKL EESDNPKYRD RAKERRENQN PDYDPSELSS FHAVAPPGAV DIRAADALKI SIENSKYLGG DVEHTHLVKG LDYALLNKVR 101: SEIVKKPDGE DGDGGKTSAP KEDQRVTFRT IAAKSVYQWI VKPQTIIKSN EMFLPGRMTF VYDMEGGYTH DIPTTLYRSK ADCPVPEEFV TVNVDGSVLD 201: RIAKIMSYLR LGSSGKVLKK KKKEKDGKGK MSTIANDYDE DDNKSKIENG SSVNISDREV LPPPPPLPPG INHLDLSTKQ EEPPVARTDD DDIFVGEGVD 301: YTVPGKDVTQ SPISEDMEES PRDKEKVSYF DEPAYGPVQE KVPYFAEPAY GPVQPSAGQE WQDMSAYGAM QTQGLAPGYP GEWQEYQYAE QTGYQEQYLQ 401: PGMEGYEVQP ETDVLLDPQL MSQEEKDRGL GSVFKRDDQR LQQLRESDAR EKDPTFVSES YSECYPGYQE YNHEIVGSDE EPDLSKMDMG GKAKGGLHRW 501: DFETEEEWEK YNEQKEAMPK AAFQFGVKMQ DGRKTRKQNR DRDQKLNNEL HQINKILTRK KMEKEGGDVA SLDAAEAQTP KRSKH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)