AT5G58190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : evolutionarily conserved C-terminal region 10 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
evolutionarily conserved C-terminal region 10 (ECT10); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 5 (TAIR:AT3G13060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:23546434..23549363 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58345.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.72 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||||||
| Length | 527 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDPASSSSSN QRNRIVSSGE RPVMADNGVQ QVSHDDGRNI VSSSYSSSVV PSPDPAPYYN VLQTPTNLYH YDWDIANSGY AQGINTWDGY PRYATTTPEA 101: MHVPPVVYND NSSLMYQYPG YGFNPYPSVM LEGQIPVSPA YYPQPFGAPS AMHYLPSDID PTSAAYMIPY GQYGGGNYSG NQGDISLTSH IPYPQTMGIL 201: GPYDHNASQV ALHGSGVASS SSLGGYYHVG SYQNPSSTPS YYGVDNRVRL TPDIGKRREK DQGSISSTSD LYGNRGPRAS SRVKSKNSSK PCSTIGDSAS 301: DSSTAGPNPS LYNHPEFVTD YKNAKFFIVK SFSEDNVHRS IKYNVWASTP HGNKKLDTAY RDAEKMGGKC PIFLFFSVNA SGQFCGVSEM VGPVDFEKDA 401: GYWQQDRWSG QFPVKWHIVK DIPNNRFCHI LLQNNDNKPV THSRDSQEVK LRQGIEMLRI FKEYEAHTSI LDDFGYYDEL EGQKVGEDGT RKKAGEEETS 501: VEQLSERLQA VKVEDGKEEE KKELIAD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)