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AT3G06540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Rab escort protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Rab escort protein (REP); FUNCTIONS IN: RAB GDP-dissociation inhibitor activity; INVOLVED IN: intracellular protein transport, regulation of GTPase activity, protein transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rab GTPase activator (InterPro:IPR002005), Rab protein geranylgeranyltransferase component A, eukaryota (InterPro:IPR016664), Yeast Mrs6p protein (InterPro:IPR000632), GDP dissociation inhibitor (InterPro:IPR018203); BEST Arabidopsis thaliana protein match is: guanosine nucleotide diphosphate dissociation inhibitor 1 (TAIR:AT2G44100.1); Has 1226 Blast hits to 1117 proteins in 247 species: Archae - 0; Bacteria - 2; Metazoa - 578; Fungi - 292; Plants - 178; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5044eggNOG:KOG4405EMBL:AF409086EMBL:CP002686
EnsemblPlants:AT3G06540EnsemblPlants:AT3G06540.1entrez:819832Gene3D:3.50.50.60
GeneID:819832GO:GO:0005737GO:GO:0005829GO:GO:0005968
GO:GO:0006886GO:GO:0016491GO:GO:0017137GO:GO:0018344
GO:GO:2000541Gramene:AT3G06540.1HOGENOM:HOG000030579InterPro:IPR001738
InterPro:IPR017230InterPro:IPR018203InterPro:IPR023753KEGG:ath:AT3G06540
OMA:PNEEFFPPfam:PF00996PhylomeDB:Q8LLD4PIRSF:PIRSF016550
PRINTS:PR00891PRINTS:PR00894Proteomes:UP000006548RefSeq:NP_187306.2
SMR:Q8LLD4STRING:3702.AT3G06540.1SUPFAM:SSF51905SUPFAM:SSF54373
TAIR:AT3G06540tair10-symbols:AthREPtair10-symbols:REPUniGene:At.40504
UniProt:Q8LLD4
Coordinates (TAIR10) chr3:-:2035201..2037662
Molecular Weight (calculated) 61514.40 Da
IEP (calculated) 4.51
GRAVY (calculated) -0.10
Length 563 amino acids
Sequence (TAIR10)
(BLAST)
001: MIDIPPYPPL DPSNYDLIVV GTGVSESVLA AAASSSGSSV LHLDPNPFYG SHFASLSLPD LTSFLHSNSV SPPPSPSSPP LPPSNNHDFI SVDLVNRSLY
101: SSVEISSFES EILEEHSRRF NVDLAGPRVV FCADESINLM LKSGANNYVE FKSIDASFVG DSSGELRNVP DSRAAIFKDK SLTLLEKNQL MKFFKLVQSH
201: LASSTEKDDS TTVKISEEDM ESPFVDFLSK MRLPPKIKSI ILYAIAMLDY DQDNTETCRH LLKTKEGIDR LALYITSMGR FSNALGALIY PIYGQGELPQ
301: AFCRRAAVKG CIYVLRMPIT ALLLDKETGG YKGVRLASGQ EIFSQKLILD PCVTVGLESL SSLTDQQNET LSVLVPKSMI NKEKIARGVC VIRGSVKANV
401: SNALVVYPPK SLFPEQLTAI RVLQLGSGLA VCPADMHVLY LSTLCDNDDQ GIKALLSAMS NLISLPVPEN RQSDSVVEND TSETKPILLW RALYVQELVK
501: GEFGGTISSM PSPDGNLNYN EIVESAVKLY EKLMGSEELF KEETSPAENT TEEENDGGVE IED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)